Tag Archives: json

Writing Big JSON Files With Jackson

Post Syndicated from Bozho original https://techblog.bozho.net/writing-big-json-files-with-jackson/

Sometimes you need to export a lot of data to JSON to a file. Maybe it’s “export all data to JSON”, or the GDPR “Right to portability”, where you effectively need to do the same.

And as with any big dataset, you can’t just fit it all in memory and write it to a file. It takes a while, it reads a lot of entries from the database and you need to be careful not to make such exports overload the entire system, or run out of memory.

Luckily, it’s fairly straightforward to do that, with a the help Jackson’s SequenceWriter and optionally of piped streams. Here’s how it would look like:

    private ObjectMapper jsonMapper = new ObjectMapper();
    private ExecutorService executorService = Executors.newFixedThreadPool(5);

    @Async
    public ListenableFuture<Boolean> export(UUID customerId) {
        try (PipedInputStream in = new PipedInputStream();
                PipedOutputStream pipedOut = new PipedOutputStream(in);
                GZIPOutputStream out = new GZIPOutputStream(pipedOut)) {
        
            Stopwatch stopwatch = Stopwatch.createStarted();

            ObjectWriter writer = jsonMapper.writer().withDefaultPrettyPrinter();

            try(SequenceWriter sequenceWriter = writer.writeValues(out)) {
                sequenceWriter.init(true);
            
                Future<?> storageFuture = executorService.submit(() ->
                       storageProvider.storeFile(getFilePath(customerId), in));

                int batchCounter = 0;
                while (true) {
                    List<Record> batch = readDatabaseBatch(batchCounter++);
                    for (Record record : batch) {
                        sequenceWriter.write(entry);
                    }
                }

                // wait for storing to complete
                storageFuture.get();
            }  

            logger.info("Exporting took {} seconds", stopwatch.stop().elapsed(TimeUnit.SECONDS));

            return AsyncResult.forValue(true);
        } catch (Exception ex) {
            logger.error("Failed to export data", ex);
            return AsyncResult.forValue(false);
        }
    }

The code does a few things:

  • Uses a SequenceWriter to continuously write records. It is initialized with an OutputStream, to which everything is written. This could be a simple FileOutputStream, or a piped stream as discussed below. Note that the naming here is a bit misleading – writeValues(out) sounds like you are instructing the writer to write something now; instead it configures it to use the particular stream later.
  • The SequenceWriter is initialized with true, which means “wrap in array”. You are writing many identical records, so they should represent an array in the final JSON.
  • Uses PipedOutputStream and PipedInputStream to link the SequenceWriter to a an InputStream which is then passed to a storage service. If we were explicitly working with files, there would be no need for that – simply passing a FileOutputStream would do. However, you may want to store the file differently, e.g. in Amazon S3, and there the putObject call requires an InputStream from which to read data and store it in S3. So, in effect, you are writing to an OutputStream which is directly written to an InputStream, which, when attampted to be read from, gets everything written to another OutputStream
  • Storing the file is invoked in a separate thread, so that writing to the file does not block the current thread, whose purpose is to read from the database. Again, this would not be needed if simple FileOutputStream was used.
  • The whole method is marked as @Async (spring) so that it doesn’t block execution – it gets invoked and finishes when ready (using an internal Spring executor service with a limited thread pool)
  • The database batch reading code is not shown here, as it varies depending on the database. The point is, you should fetch your data in batches, rather than SELECT * FROM X.
  • The OutputStream is wrapped in a GZIPOutputStream, as text files like JSON with repetitive elements benefit significantly from compression

The main work is done by Jackson’s SequenceWriter, and the (kind of obvious) point to take home is – don’t assume your data will fit in memory. It almost never does, so do everything in batches and incremental writes.

The post Writing Big JSON Files With Jackson appeared first on Bozho's tech blog.

Use Slack ChatOps to Deploy Your Code – How to Integrate Your Pipeline in AWS CodePipeline with Your Slack Channel

Post Syndicated from Rumi Olsen original https://aws.amazon.com/blogs/devops/use-slack-chatops-to-deploy-your-code-how-to-integrate-your-pipeline-in-aws-codepipeline-with-your-slack-channel/

Slack is widely used by DevOps and development teams to communicate status. Typically, when a build has been tested and is ready to be promoted to a staging environment, a QA engineer or DevOps engineer kicks off the deployment. Using Slack in a ChatOps collaboration model, the promotion can be done in a single click from a Slack channel. And because the promotion happens through a Slack channel, the whole development team knows what’s happening without checking email.

In this blog post, I will show you how to integrate AWS services with a Slack application. I use an interactive message button and incoming webhook to promote a stage with a single click.

To follow along with the steps in this post, you’ll need a pipeline in AWS CodePipeline. If you don’t have a pipeline, the fastest way to create one for this use case is to use AWS CodeStar. Go to the AWS CodeStar console and select the Static Website template (shown in the screenshot). AWS CodeStar will create a pipeline with an AWS CodeCommit repository and an AWS CodeDeploy deployment for you. After the pipeline is created, you will need to add a manual approval stage.

You’ll also need to build a Slack app with webhooks and interactive components, write two Lambda functions, and create an API Gateway API and a SNS topic.

As you’ll see in the following diagram, when I make a change and merge a new feature into the master branch in AWS CodeCommit, the check-in kicks off my CI/CD pipeline in AWS CodePipeline. When CodePipeline reaches the approval stage, it sends a notification to Amazon SNS, which triggers an AWS Lambda function (ApprovalRequester).

The Slack channel receives a prompt that looks like the following screenshot. When I click Yes to approve the build promotion, the approval result is sent to CodePipeline through API Gateway and Lambda (ApprovalHandler). The pipeline continues on to deploy the build to the next environment.

Create a Slack app

For App Name, type a name for your app. For Development Slack Workspace, choose the name of your workspace. You’ll see in the following screenshot that my workspace is AWS ChatOps.

After the Slack application has been created, you will see the Basic Information page, where you can create incoming webhooks and enable interactive components.

To add incoming webhooks:

  1. Under Add features and functionality, choose Incoming Webhooks. Turn the feature on by selecting Off, as shown in the following screenshot.
  2. Now that the feature is turned on, choose Add New Webhook to Workspace. In the process of creating the webhook, Slack lets you choose the channel where messages will be posted.
  3. After the webhook has been created, you’ll see its URL. You will use this URL when you create the Lambda function.

If you followed the steps in the post, the pipeline should look like the following.

Write the Lambda function for approval requests

This Lambda function is invoked by the SNS notification. It sends a request that consists of an interactive message button to the incoming webhook you created earlier.  The following sample code sends the request to the incoming webhook. WEBHOOK_URL and SLACK_CHANNEL are the environment variables that hold values of the webhook URL that you created and the Slack channel where you want the interactive message button to appear.

# This function is invoked via SNS when the CodePipeline manual approval action starts.
# It will take the details from this approval notification and sent an interactive message to Slack that allows users to approve or cancel the deployment.

import os
import json
import logging
import urllib.parse

from base64 import b64decode
from urllib.request import Request, urlopen
from urllib.error import URLError, HTTPError

# This is passed as a plain-text environment variable for ease of demonstration.
# Consider encrypting the value with KMS or use an encrypted parameter in Parameter Store for production deployments.
SLACK_WEBHOOK_URL = os.environ['SLACK_WEBHOOK_URL']
SLACK_CHANNEL = os.environ['SLACK_CHANNEL']

logger = logging.getLogger()
logger.setLevel(logging.INFO)

def lambda_handler(event, context):
    print("Received event: " + json.dumps(event, indent=2))
    message = event["Records"][0]["Sns"]["Message"]
    
    data = json.loads(message) 
    token = data["approval"]["token"]
    codepipeline_name = data["approval"]["pipelineName"]
    
    slack_message = {
        "channel": SLACK_CHANNEL,
        "text": "Would you like to promote the build to production?",
        "attachments": [
            {
                "text": "Yes to deploy your build to production",
                "fallback": "You are unable to promote a build",
                "callback_id": "wopr_game",
                "color": "#3AA3E3",
                "attachment_type": "default",
                "actions": [
                    {
                        "name": "deployment",
                        "text": "Yes",
                        "style": "danger",
                        "type": "button",
                        "value": json.dumps({"approve": True, "codePipelineToken": token, "codePipelineName": codepipeline_name}),
                        "confirm": {
                            "title": "Are you sure?",
                            "text": "This will deploy the build to production",
                            "ok_text": "Yes",
                            "dismiss_text": "No"
                        }
                    },
                    {
                        "name": "deployment",
                        "text": "No",
                        "type": "button",
                        "value": json.dumps({"approve": False, "codePipelineToken": token, "codePipelineName": codepipeline_name})
                    }  
                ]
            }
        ]
    }

    req = Request(SLACK_WEBHOOK_URL, json.dumps(slack_message).encode('utf-8'))

    response = urlopen(req)
    response.read()
    
    return None

 

Create a SNS topic

Create a topic and then create a subscription that invokes the ApprovalRequester Lambda function. You can configure the manual approval action in the pipeline to send a message to this SNS topic when an approval action is required. When the pipeline reaches the approval stage, it sends a notification to this SNS topic. SNS publishes a notification to all of the subscribed endpoints. In this case, the Lambda function is the endpoint. Therefore, it invokes and executes the Lambda function. For information about how to create a SNS topic, see Create a Topic in the Amazon SNS Developer Guide.

Write the Lambda function for handling the interactive message button

This Lambda function is invoked by API Gateway. It receives the result of the interactive message button whether or not the build promotion was approved. If approved, an API call is made to CodePipeline to promote the build to the next environment. If not approved, the pipeline stops and does not move to the next stage.

The Lambda function code might look like the following. SLACK_VERIFICATION_TOKEN is the environment variable that contains your Slack verification token. You can find your verification token under Basic Information on Slack manage app page. When you scroll down, you will see App Credential. Verification token is found under the section.

# This function is triggered via API Gateway when a user acts on the Slack interactive message sent by approval_requester.py.

from urllib.parse import parse_qs
import json
import os
import boto3

SLACK_VERIFICATION_TOKEN = os.environ['SLACK_VERIFICATION_TOKEN']

#Triggered by API Gateway
#It kicks off a particular CodePipeline project
def lambda_handler(event, context):
	#print("Received event: " + json.dumps(event, indent=2))
	body = parse_qs(event['body'])
	payload = json.loads(body['payload'][0])

	# Validate Slack token
	if SLACK_VERIFICATION_TOKEN == payload['token']:
		send_slack_message(json.loads(payload['actions'][0]['value']))
		
		# This will replace the interactive message with a simple text response.
		# You can implement a more complex message update if you would like.
		return  {
			"isBase64Encoded": "false",
			"statusCode": 200,
			"body": "{\"text\": \"The approval has been processed\"}"
		}
	else:
		return  {
			"isBase64Encoded": "false",
			"statusCode": 403,
			"body": "{\"error\": \"This request does not include a vailid verification token.\"}"
		}


def send_slack_message(action_details):
	codepipeline_status = "Approved" if action_details["approve"] else "Rejected"
	codepipeline_name = action_details["codePipelineName"]
	token = action_details["codePipelineToken"] 

	client = boto3.client('codepipeline')
	response_approval = client.put_approval_result(
							pipelineName=codepipeline_name,
							stageName='Approval',
							actionName='ApprovalOrDeny',
							result={'summary':'','status':codepipeline_status},
							token=token)
	print(response_approval)

 

Create the API Gateway API

  1. In the Amazon API Gateway console, create a resource called InteractiveMessageHandler.
  2. Create a POST method.
    • For Integration type, choose Lambda Function.
    • Select Use Lambda Proxy integration.
    • From Lambda Region, choose a region.
    • In Lambda Function, type a name for your function.
  3.  Deploy to a stage.

For more information, see Getting Started with Amazon API Gateway in the Amazon API Developer Guide.

Now go back to your Slack application and enable interactive components.

To enable interactive components for the interactive message (Yes) button:

  1. Under Features, choose Interactive Components.
  2. Choose Enable Interactive Components.
  3. Type a request URL in the text box. Use the invoke URL in Amazon API Gateway that will be called when the approval button is clicked.

Now that all the pieces have been created, run the solution by checking in a code change to your CodeCommit repo. That will release the change through CodePipeline. When the CodePipeline comes to the approval stage, it will prompt to your Slack channel to see if you want to promote the build to your staging or production environment. Choose Yes and then see if your change was deployed to the environment.

Conclusion

That is it! You have now created a Slack ChatOps solution using AWS CodeCommit, AWS CodePipeline, AWS Lambda, Amazon API Gateway, and Amazon Simple Notification Service.

Now that you know how to do this Slack and CodePipeline integration, you can use the same method to interact with other AWS services using API Gateway and Lambda. You can also use Slack’s slash command to initiate an action from a Slack channel, rather than responding in the way demonstrated in this post.

From Framework to Function: Deploying AWS Lambda Functions for Java 8 using Apache Maven Archetype

Post Syndicated from Ryosuke Iwanaga original https://aws.amazon.com/blogs/compute/from-framework-to-function-deploying-aws-lambda-functions-for-java-8-using-apache-maven-archetype/

As a serverless computing platform that supports Java 8 runtime, AWS Lambda makes it easy to run any type of Java function simply by uploading a JAR file. To help define not only a Lambda serverless application but also Amazon API Gateway, Amazon DynamoDB, and other related services, the AWS Serverless Application Model (SAM) allows developers to use a simple AWS CloudFormation template.

AWS provides the AWS Toolkit for Eclipse that supports both Lambda and SAM. AWS also gives customers an easy way to create Lambda functions and SAM applications in Java using the AWS Command Line Interface (AWS CLI). After you build a JAR file, all you have to do is type the following commands:

aws cloudformation package 
aws cloudformation deploy

To consolidate these steps, customers can use Archetype by Apache Maven. Archetype uses a predefined package template that makes getting started to develop a function exceptionally simple.

In this post, I introduce a Maven archetype that allows you to create a skeleton of AWS SAM for a Java function. Using this archetype, you can generate a sample Java code example and an accompanying SAM template to deploy it on AWS Lambda by a single Maven action.

Prerequisites

Make sure that the following software is installed on your workstation:

  • Java
  • Maven
  • AWS CLI
  • (Optional) AWS SAM CLI

Install Archetype

After you’ve set up those packages, install Archetype with the following commands:

git clone https://github.com/awslabs/aws-serverless-java-archetype
cd aws-serverless-java-archetype
mvn install

These are one-time operations, so you don’t run them for every new package. If you’d like, you can add Archetype to your company’s Maven repository so that other developers can use it later.

With those packages installed, you’re ready to develop your new Lambda Function.

Start a project

Now that you have the archetype, customize it and run the code:

cd /path/to/project_home
mvn archetype:generate \
  -DarchetypeGroupId=com.amazonaws.serverless.archetypes \
  -DarchetypeArtifactId=aws-serverless-java-archetype \
  -DarchetypeVersion=1.0.0 \
  -DarchetypeRepository=local \ # Forcing to use local maven repository
  -DinteractiveMode=false \ # For batch mode
  # You can also specify properties below interactively if you omit the line for batch mode
  -DgroupId=YOUR_GROUP_ID \
  -DartifactId=YOUR_ARTIFACT_ID \
  -Dversion=YOUR_VERSION \
  -DclassName=YOUR_CLASSNAME

You should have a directory called YOUR_ARTIFACT_ID that contains the files and folders shown below:

├── event.json
├── pom.xml
├── src
│   └── main
│       ├── java
│       │   └── Package
│       │       └── Example.java
│       └── resources
│           └── log4j2.xml
└── template.yaml

The sample code is a working example. If you install SAM CLI, you can invoke it just by the command below:

cd YOUR_ARTIFACT_ID
mvn -P invoke verify
[INFO] Scanning for projects...
[INFO]
[INFO] ---------------------------< com.riywo:foo >----------------------------
[INFO] Building foo 1.0
[INFO] --------------------------------[ jar ]---------------------------------
...
[INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ foo ---
[INFO] Building jar: /private/tmp/foo/target/foo-1.0.jar
[INFO]
[INFO] --- maven-shade-plugin:3.1.0:shade (shade) @ foo ---
[INFO] Including com.amazonaws:aws-lambda-java-core:jar:1.2.0 in the shaded jar.
[INFO] Replacing /private/tmp/foo/target/lambda.jar with /private/tmp/foo/target/foo-1.0-shaded.jar
[INFO]
[INFO] --- exec-maven-plugin:1.6.0:exec (sam-local-invoke) @ foo ---
2018/04/06 16:34:35 Successfully parsed template.yaml
2018/04/06 16:34:35 Connected to Docker 1.37
2018/04/06 16:34:35 Fetching lambci/lambda:java8 image for java8 runtime...
java8: Pulling from lambci/lambda
Digest: sha256:14df0a5914d000e15753d739612a506ddb8fa89eaa28dcceff5497d9df2cf7aa
Status: Image is up to date for lambci/lambda:java8
2018/04/06 16:34:37 Invoking Package.Example::handleRequest (java8)
2018/04/06 16:34:37 Decompressing /tmp/foo/target/lambda.jar
2018/04/06 16:34:37 Mounting /private/var/folders/x5/ldp7c38545v9x5dg_zmkr5kxmpdprx/T/aws-sam-local-1523000077594231063 as /var/task:ro inside runtime container
START RequestId: a6ae19fe-b1b0-41e2-80bc-68a40d094d74 Version: $LATEST
Log output: Greeting is 'Hello Tim Wagner.'
END RequestId: a6ae19fe-b1b0-41e2-80bc-68a40d094d74
REPORT RequestId: a6ae19fe-b1b0-41e2-80bc-68a40d094d74	Duration: 96.60 ms	Billed Duration: 100 ms	Memory Size: 128 MB	Max Memory Used: 7 MB

{"greetings":"Hello Tim Wagner."}


[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 10.452 s
[INFO] Finished at: 2018-04-06T16:34:40+09:00
[INFO] ------------------------------------------------------------------------

This maven goal invokes sam local invoke -e event.json, so you can see the sample output to greet Tim Wagner.

To deploy this application to AWS, you need an Amazon S3 bucket to upload your package. You can use the following command to create a bucket if you want:

aws s3 mb s3://YOUR_BUCKET --region YOUR_REGION

Now, you can deploy your application by just one command!

mvn deploy \
    -DawsRegion=YOUR_REGION \
    -Ds3Bucket=YOUR_BUCKET \
    -DstackName=YOUR_STACK
[INFO] Scanning for projects...
[INFO]
[INFO] ---------------------------< com.riywo:foo >----------------------------
[INFO] Building foo 1.0
[INFO] --------------------------------[ jar ]---------------------------------
...
[INFO] --- exec-maven-plugin:1.6.0:exec (sam-package) @ foo ---
Uploading to aws-serverless-java/com.riywo:foo:1.0/924732f1f8e4705c87e26ef77b080b47  11657 / 11657.0  (100.00%)
Successfully packaged artifacts and wrote output template to file target/sam.yaml.
Execute the following command to deploy the packaged template
aws cloudformation deploy --template-file /private/tmp/foo/target/sam.yaml --stack-name <YOUR STACK NAME>
[INFO]
[INFO] --- maven-deploy-plugin:2.8.2:deploy (default-deploy) @ foo ---
[INFO] Skipping artifact deployment
[INFO]
[INFO] --- exec-maven-plugin:1.6.0:exec (sam-deploy) @ foo ---

Waiting for changeset to be created..
Waiting for stack create/update to complete
Successfully created/updated stack - archetype
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 37.176 s
[INFO] Finished at: 2018-04-06T16:41:02+09:00
[INFO] ------------------------------------------------------------------------

Maven automatically creates a shaded JAR file, uploads it to your S3 bucket, replaces template.yaml, and creates and updates the CloudFormation stack.

To customize the process, modify the pom.xml file. For example, to avoid typing values for awsRegion, s3Bucket or stackName, write them inside pom.xml and check in your VCS. Afterward, you and the rest of your team can deploy the function by typing just the following command:

mvn deploy

Options

Lambda Java 8 runtime has some types of handlers: POJO, Simple type and Stream. The default option of this archetype is POJO style, which requires to create request and response classes, but they are baked by the archetype by default. If you want to use other type of handlers, you can use handlerType property like below:

## POJO type (default)
mvn archetype:generate \
 ...
 -DhandlerType=pojo

## Simple type - String
mvn archetype:generate \
 ...
 -DhandlerType=simple

### Stream type
mvn archetype:generate \
 ...
 -DhandlerType=stream

See documentation for more details about handlers.

Also, Lambda Java 8 runtime supports two types of Logging class: Log4j 2 and LambdaLogger. This archetype creates LambdaLogger implementation by default, but you can use Log4j 2 if you want:

## LambdaLogger (default)
mvn archetype:generate \
 ...
 -Dlogger=lambda

## Log4j 2
mvn archetype:generate \
 ...
 -Dlogger=log4j2

If you use LambdaLogger, you can delete ./src/main/resources/log4j2.xml. See documentation for more details.

Conclusion

So, what’s next? Develop your Lambda function locally and type the following command: mvn deploy !

With this Archetype code example, available on GitHub repo, you should be able to deploy Lambda functions for Java 8 in a snap. If you have any questions or comments, please submit them below or leave them on GitHub.

Analyze Apache Parquet optimized data using Amazon Kinesis Data Firehose, Amazon Athena, and Amazon Redshift

Post Syndicated from Roy Hasson original https://aws.amazon.com/blogs/big-data/analyzing-apache-parquet-optimized-data-using-amazon-kinesis-data-firehose-amazon-athena-and-amazon-redshift/

Amazon Kinesis Data Firehose is the easiest way to capture and stream data into a data lake built on Amazon S3. This data can be anything—from AWS service logs like AWS CloudTrail log files, Amazon VPC Flow Logs, Application Load Balancer logs, and others. It can also be IoT events, game events, and much more. To efficiently query this data, a time-consuming ETL (extract, transform, and load) process is required to massage and convert the data to an optimal file format, which increases the time to insight. This situation is less than ideal, especially for real-time data that loses its value over time.

To solve this common challenge, Kinesis Data Firehose can now save data to Amazon S3 in Apache Parquet or Apache ORC format. These are optimized columnar formats that are highly recommended for best performance and cost-savings when querying data in S3. This feature directly benefits you if you use Amazon Athena, Amazon Redshift, AWS Glue, Amazon EMR, or any other big data tools that are available from the AWS Partner Network and through the open-source community.

Amazon Connect is a simple-to-use, cloud-based contact center service that makes it easy for any business to provide a great customer experience at a lower cost than common alternatives. Its open platform design enables easy integration with other systems. One of those systems is Amazon Kinesis—in particular, Kinesis Data Streams and Kinesis Data Firehose.

What’s really exciting is that you can now save events from Amazon Connect to S3 in Apache Parquet format. You can then perform analytics using Amazon Athena and Amazon Redshift Spectrum in real time, taking advantage of this key performance and cost optimization. Of course, Amazon Connect is only one example. This new capability opens the door for a great deal of opportunity, especially as organizations continue to build their data lakes.

Amazon Connect includes an array of analytics views in the Administrator dashboard. But you might want to run other types of analysis. In this post, I describe how to set up a data stream from Amazon Connect through Kinesis Data Streams and Kinesis Data Firehose and out to S3, and then perform analytics using Athena and Amazon Redshift Spectrum. I focus primarily on the Kinesis Data Firehose support for Parquet and its integration with the AWS Glue Data Catalog, Amazon Athena, and Amazon Redshift.

Solution overview

Here is how the solution is laid out:

 

 

The following sections walk you through each of these steps to set up the pipeline.

1. Define the schema

When Kinesis Data Firehose processes incoming events and converts the data to Parquet, it needs to know which schema to apply. The reason is that many times, incoming events contain all or some of the expected fields based on which values the producers are advertising. A typical process is to normalize the schema during a batch ETL job so that you end up with a consistent schema that can easily be understood and queried. Doing this introduces latency due to the nature of the batch process. To overcome this issue, Kinesis Data Firehose requires the schema to be defined in advance.

To see the available columns and structures, see Amazon Connect Agent Event Streams. For the purpose of simplicity, I opted to make all the columns of type String rather than create the nested structures. But you can definitely do that if you want.

The simplest way to define the schema is to create a table in the Amazon Athena console. Open the Athena console, and paste the following create table statement, substituting your own S3 bucket and prefix for where your event data will be stored. A Data Catalog database is a logical container that holds the different tables that you can create. The default database name shown here should already exist. If it doesn’t, you can create it or use another database that you’ve already created.

CREATE EXTERNAL TABLE default.kfhconnectblog (
  awsaccountid string,
  agentarn string,
  currentagentsnapshot string,
  eventid string,
  eventtimestamp string,
  eventtype string,
  instancearn string,
  previousagentsnapshot string,
  version string
)
STORED AS parquet
LOCATION 's3://your_bucket/kfhconnectblog/'
TBLPROPERTIES ("parquet.compression"="SNAPPY")

That’s all you have to do to prepare the schema for Kinesis Data Firehose.

2. Define the data streams

Next, you need to define the Kinesis data streams that will be used to stream the Amazon Connect events.  Open the Kinesis Data Streams console and create two streams.  You can configure them with only one shard each because you don’t have a lot of data right now.

3. Define the Kinesis Data Firehose delivery stream for Parquet

Let’s configure the Data Firehose delivery stream using the data stream as the source and Amazon S3 as the output. Start by opening the Kinesis Data Firehose console and creating a new data delivery stream. Give it a name, and associate it with the Kinesis data stream that you created in Step 2.

As shown in the following screenshot, enable Record format conversion (1) and choose Apache Parquet (2). As you can see, Apache ORC is also supported. Scroll down and provide the AWS Glue Data Catalog database name (3) and table names (4) that you created in Step 1. Choose Next.

To make things easier, the output S3 bucket and prefix fields are automatically populated using the values that you defined in the LOCATION parameter of the create table statement from Step 1. Pretty cool. Additionally, you have the option to save the raw events into another location as defined in the Source record S3 backup section. Don’t forget to add a trailing forward slash “ / “ so that Data Firehose creates the date partitions inside that prefix.

On the next page, in the S3 buffer conditions section, there is a note about configuring a large buffer size. The Parquet file format is highly efficient in how it stores and compresses data. Increasing the buffer size allows you to pack more rows into each output file, which is preferred and gives you the most benefit from Parquet.

Compression using Snappy is automatically enabled for both Parquet and ORC. You can modify the compression algorithm by using the Kinesis Data Firehose API and update the OutputFormatConfiguration.

Be sure to also enable Amazon CloudWatch Logs so that you can debug any issues that you might run into.

Lastly, finalize the creation of the Firehose delivery stream, and continue on to the next section.

4. Set up the Amazon Connect contact center

After setting up the Kinesis pipeline, you now need to set up a simple contact center in Amazon Connect. The Getting Started page provides clear instructions on how to set up your environment, acquire a phone number, and create an agent to accept calls.

After setting up the contact center, in the Amazon Connect console, choose your Instance Alias, and then choose Data Streaming. Under Agent Event, choose the Kinesis data stream that you created in Step 2, and then choose Save.

At this point, your pipeline is complete.  Agent events from Amazon Connect are generated as agents go about their day. Events are sent via Kinesis Data Streams to Kinesis Data Firehose, which converts the event data from JSON to Parquet and stores it in S3. Athena and Amazon Redshift Spectrum can simply query the data without any additional work.

So let’s generate some data. Go back into the Administrator console for your Amazon Connect contact center, and create an agent to handle incoming calls. In this example, I creatively named mine Agent One. After it is created, Agent One can get to work and log into their console and set their availability to Available so that they are ready to receive calls.

To make the data a bit more interesting, I also created a second agent, Agent Two. I then made some incoming and outgoing calls and caused some failures to occur, so I now have enough data available to analyze.

5. Analyze the data with Athena

Let’s open the Athena console and run some queries. One thing you’ll notice is that when we created the schema for the dataset, we defined some of the fields as Strings even though in the documentation they were complex structures.  The reason for doing that was simply to show some of the flexibility of Athena to be able to parse JSON data. However, you can define nested structures in your table schema so that Kinesis Data Firehose applies the appropriate schema to the Parquet file.

Let’s run the first query to see which agents have logged into the system.

The query might look complex, but it’s fairly straightforward:

WITH dataset AS (
  SELECT 
    from_iso8601_timestamp(eventtimestamp) AS event_ts,
    eventtype,
    -- CURRENT STATE
    json_extract_scalar(
      currentagentsnapshot,
      '$.agentstatus.name') AS current_status,
    from_iso8601_timestamp(
      json_extract_scalar(
        currentagentsnapshot,
        '$.agentstatus.starttimestamp')) AS current_starttimestamp,
    json_extract_scalar(
      currentagentsnapshot, 
      '$.configuration.firstname') AS current_firstname,
    json_extract_scalar(
      currentagentsnapshot,
      '$.configuration.lastname') AS current_lastname,
    json_extract_scalar(
      currentagentsnapshot, 
      '$.configuration.username') AS current_username,
    json_extract_scalar(
      currentagentsnapshot, 
      '$.configuration.routingprofile.defaultoutboundqueue.name') AS               current_outboundqueue,
    json_extract_scalar(
      currentagentsnapshot, 
      '$.configuration.routingprofile.inboundqueues[0].name') as current_inboundqueue,
    -- PREVIOUS STATE
    json_extract_scalar(
      previousagentsnapshot, 
      '$.agentstatus.name') as prev_status,
    from_iso8601_timestamp(
      json_extract_scalar(
        previousagentsnapshot, 
       '$.agentstatus.starttimestamp')) as prev_starttimestamp,
    json_extract_scalar(
      previousagentsnapshot, 
      '$.configuration.firstname') as prev_firstname,
    json_extract_scalar(
      previousagentsnapshot, 
      '$.configuration.lastname') as prev_lastname,
    json_extract_scalar(
      previousagentsnapshot, 
      '$.configuration.username') as prev_username,
    json_extract_scalar(
      previousagentsnapshot, 
      '$.configuration.routingprofile.defaultoutboundqueue.name') as current_outboundqueue,
    json_extract_scalar(
      previousagentsnapshot, 
      '$.configuration.routingprofile.inboundqueues[0].name') as prev_inboundqueue
  from kfhconnectblog
  where eventtype <> 'HEART_BEAT'
)
SELECT
  current_status as status,
  current_username as username,
  event_ts
FROM dataset
WHERE eventtype = 'LOGIN' AND current_username <> ''
ORDER BY event_ts DESC

The query output looks something like this:

Here is another query that shows the sessions each of the agents engaged with. It tells us where they were incoming or outgoing, if they were completed, and where there were missed or failed calls.

WITH src AS (
  SELECT
     eventid,
     json_extract_scalar(currentagentsnapshot, '$.configuration.username') as username,
     cast(json_extract(currentagentsnapshot, '$.contacts') AS ARRAY(JSON)) as c,
     cast(json_extract(previousagentsnapshot, '$.contacts') AS ARRAY(JSON)) as p
  from kfhconnectblog
),
src2 AS (
  SELECT *
  FROM src CROSS JOIN UNNEST (c, p) AS contacts(c_item, p_item)
),
dataset AS (
SELECT 
  eventid,
  username,
  json_extract_scalar(c_item, '$.contactid') as c_contactid,
  json_extract_scalar(c_item, '$.channel') as c_channel,
  json_extract_scalar(c_item, '$.initiationmethod') as c_direction,
  json_extract_scalar(c_item, '$.queue.name') as c_queue,
  json_extract_scalar(c_item, '$.state') as c_state,
  from_iso8601_timestamp(json_extract_scalar(c_item, '$.statestarttimestamp')) as c_ts,
  
  json_extract_scalar(p_item, '$.contactid') as p_contactid,
  json_extract_scalar(p_item, '$.channel') as p_channel,
  json_extract_scalar(p_item, '$.initiationmethod') as p_direction,
  json_extract_scalar(p_item, '$.queue.name') as p_queue,
  json_extract_scalar(p_item, '$.state') as p_state,
  from_iso8601_timestamp(json_extract_scalar(p_item, '$.statestarttimestamp')) as p_ts
FROM src2
)
SELECT 
  username,
  c_channel as channel,
  c_direction as direction,
  p_state as prev_state,
  c_state as current_state,
  c_ts as current_ts,
  c_contactid as id
FROM dataset
WHERE c_contactid = p_contactid
ORDER BY id DESC, current_ts ASC

The query output looks similar to the following:

6. Analyze the data with Amazon Redshift Spectrum

With Amazon Redshift Spectrum, you can query data directly in S3 using your existing Amazon Redshift data warehouse cluster. Because the data is already in Parquet format, Redshift Spectrum gets the same great benefits that Athena does.

Here is a simple query to show querying the same data from Amazon Redshift. Note that to do this, you need to first create an external schema in Amazon Redshift that points to the AWS Glue Data Catalog.

SELECT 
  eventtype,
  json_extract_path_text(currentagentsnapshot,'agentstatus','name') AS current_status,
  json_extract_path_text(currentagentsnapshot, 'configuration','firstname') AS current_firstname,
  json_extract_path_text(currentagentsnapshot, 'configuration','lastname') AS current_lastname,
  json_extract_path_text(
    currentagentsnapshot,
    'configuration','routingprofile','defaultoutboundqueue','name') AS current_outboundqueue,
FROM default_schema.kfhconnectblog

The following shows the query output:

Summary

In this post, I showed you how to use Kinesis Data Firehose to ingest and convert data to columnar file format, enabling real-time analysis using Athena and Amazon Redshift. This great feature enables a level of optimization in both cost and performance that you need when storing and analyzing large amounts of data. This feature is equally important if you are investing in building data lakes on AWS.

 


Additional Reading

If you found this post useful, be sure to check out Analyzing VPC Flow Logs with Amazon Kinesis Firehose, Amazon Athena, and Amazon QuickSight and Work with partitioned data in AWS Glue.


About the Author

Roy Hasson is a Global Business Development Manager for AWS Analytics. He works with customers around the globe to design solutions to meet their data processing, analytics and business intelligence needs. Roy is big Manchester United fan cheering his team on and hanging out with his family.

 

 

 

Analyze data in Amazon DynamoDB using Amazon SageMaker for real-time prediction

Post Syndicated from YongSeong Lee original https://aws.amazon.com/blogs/big-data/analyze-data-in-amazon-dynamodb-using-amazon-sagemaker-for-real-time-prediction/

Many companies across the globe use Amazon DynamoDB to store and query historical user-interaction data. DynamoDB is a fast NoSQL database used by applications that need consistent, single-digit millisecond latency.

Often, customers want to turn their valuable data in DynamoDB into insights by analyzing a copy of their table stored in Amazon S3. Doing this separates their analytical queries from their low-latency critical paths. This data can be the primary source for understanding customers’ past behavior, predicting future behavior, and generating downstream business value. Customers often turn to DynamoDB because of its great scalability and high availability. After a successful launch, many customers want to use the data in DynamoDB to predict future behaviors or provide personalized recommendations.

DynamoDB is a good fit for low-latency reads and writes, but it’s not practical to scan all data in a DynamoDB database to train a model. In this post, I demonstrate how you can use DynamoDB table data copied to Amazon S3 by AWS Data Pipeline to predict customer behavior. I also demonstrate how you can use this data to provide personalized recommendations for customers using Amazon SageMaker. You can also run ad hoc queries using Amazon Athena against the data. DynamoDB recently released on-demand backups to create full table backups with no performance impact. However, it’s not suitable for our purposes in this post, so I chose AWS Data Pipeline instead to create managed backups are accessible from other services.

To do this, I describe how to read the DynamoDB backup file format in Data Pipeline. I also describe how to convert the objects in S3 to a CSV format that Amazon SageMaker can read. In addition, I show how to schedule regular exports and transformations using Data Pipeline. The sample data used in this post is from Bank Marketing Data Set of UCI.

The solution that I describe provides the following benefits:

  • Separates analytical queries from production traffic on your DynamoDB table, preserving your DynamoDB read capacity units (RCUs) for important production requests
  • Automatically updates your model to get real-time predictions
  • Optimizes for performance (so it doesn’t compete with DynamoDB RCUs after the export) and for cost (using data you already have)
  • Makes it easier for developers of all skill levels to use Amazon SageMaker

All code and data set in this post are available in this .zip file.

Solution architecture

The following diagram shows the overall architecture of the solution.

The steps that data follows through the architecture are as follows:

  1. Data Pipeline regularly copies the full contents of a DynamoDB table as JSON into an S3
  2. Exported JSON files are converted to comma-separated value (CSV) format to use as a data source for Amazon SageMaker.
  3. Amazon SageMaker renews the model artifact and update the endpoint.
  4. The converted CSV is available for ad hoc queries with Amazon Athena.
  5. Data Pipeline controls this flow and repeats the cycle based on the schedule defined by customer requirements.

Building the auto-updating model

This section discusses details about how to read the DynamoDB exported data in Data Pipeline and build automated workflows for real-time prediction with a regularly updated model.

Download sample scripts and data

Before you begin, take the following steps:

  1. Download sample scripts in this .zip file.
  2. Unzip the src.zip file.
  3. Find the automation_script.sh file and edit it for your environment. For example, you need to replace 's3://<your bucket>/<datasource path>/' with your own S3 path to the data source for Amazon ML. In the script, the text enclosed by angle brackets—< and >—should be replaced with your own path.
  4. Upload the json-serde-1.3.6-SNAPSHOT-jar-with-dependencies.jar file to your S3 path so that the ADD jar command in Apache Hive can refer to it.

For this solution, the banking.csv  should be imported into a DynamoDB table.

Export a DynamoDB table

To export the DynamoDB table to S3, open the Data Pipeline console and choose the Export DynamoDB table to S3 template. In this template, Data Pipeline creates an Amazon EMR cluster and performs an export in the EMRActivity activity. Set proper intervals for backups according to your business requirements.

One core node(m3.xlarge) provides the default capacity for the EMR cluster and should be suitable for the solution in this post. Leave the option to resize the cluster before running enabled in the TableBackupActivity activity to let Data Pipeline scale the cluster to match the table size. The process of converting to CSV format and renewing models happens in this EMR cluster.

For a more in-depth look at how to export data from DynamoDB, see Export Data from DynamoDB in the Data Pipeline documentation.

Add the script to an existing pipeline

After you export your DynamoDB table, you add an additional EMR step to EMRActivity by following these steps:

  1. Open the Data Pipeline console and choose the ID for the pipeline that you want to add the script to.
  2. For Actions, choose Edit.
  3. In the editing console, choose the Activities category and add an EMR step using the custom script downloaded in the previous section, as shown below.

Paste the following command into the new step after the data ­­upload step:

s3://#{myDDBRegion}.elasticmapreduce/libs/script-runner/script-runner.jar,s3://<your bucket name>/automation_script.sh,#{output.directoryPath},#{myDDBRegion}

The element #{output.directoryPath} references the S3 path where the data pipeline exports DynamoDB data as JSON. The path should be passed to the script as an argument.

The bash script has two goals, converting data formats and renewing the Amazon SageMaker model. Subsequent sections discuss the contents of the automation script.

Automation script: Convert JSON data to CSV with Hive

We use Apache Hive to transform the data into a new format. The Hive QL script to create an external table and transform the data is included in the custom script that you added to the Data Pipeline definition.

When you run the Hive scripts, do so with the -e option. Also, define the Hive table with the 'org.openx.data.jsonserde.JsonSerDe' row format to parse and read JSON format. The SQL creates a Hive EXTERNAL table, and it reads the DynamoDB backup data on the S3 path passed to it by Data Pipeline.

Note: You should create the table with the “EXTERNAL” keyword to avoid the backup data being accidentally deleted from S3 if you drop the table.

The full automation script for converting follows. Add your own bucket name and data source path in the highlighted areas.

#!/bin/bash
hive -e "
ADD jar s3://<your bucket name>/json-serde-1.3.6-SNAPSHOT-jar-with-dependencies.jar ; 
DROP TABLE IF EXISTS blog_backup_data ;
CREATE EXTERNAL TABLE blog_backup_data (
 customer_id map<string,string>,
 age map<string,string>, job map<string,string>, 
 marital map<string,string>,education map<string,string>, 
 default map<string,string>, housing map<string,string>,
 loan map<string,string>, contact map<string,string>, 
 month map<string,string>, day_of_week map<string,string>, 
 duration map<string,string>, campaign map<string,string>,
 pdays map<string,string>, previous map<string,string>, 
 poutcome map<string,string>, emp_var_rate map<string,string>, 
 cons_price_idx map<string,string>, cons_conf_idx map<string,string>,
 euribor3m map<string,string>, nr_employed map<string,string>, 
 y map<string,string> ) 
ROW FORMAT SERDE 'org.openx.data.jsonserde.JsonSerDe' 
LOCATION '$1/';

INSERT OVERWRITE DIRECTORY 's3://<your bucket name>/<datasource path>/' 
SELECT concat( customer_id['s'],',', 
 age['n'],',', job['s'],',', 
 marital['s'],',', education['s'],',', default['s'],',', 
 housing['s'],',', loan['s'],',', contact['s'],',', 
 month['s'],',', day_of_week['s'],',', duration['n'],',', 
 campaign['n'],',',pdays['n'],',',previous['n'],',', 
 poutcome['s'],',', emp_var_rate['n'],',', cons_price_idx['n'],',',
 cons_conf_idx['n'],',', euribor3m['n'],',', nr_employed['n'],',', y['n'] ) 
FROM blog_backup_data
WHERE customer_id['s'] > 0 ; 

After creating an external table, you need to read data. You then use the INSERT OVERWRITE DIRECTORY ~ SELECT command to write CSV data to the S3 path that you designated as the data source for Amazon SageMaker.

Depending on your requirements, you can eliminate or process the columns in the SELECT clause in this step to optimize data analysis. For example, you might remove some columns that have unpredictable correlations with the target value because keeping the wrong columns might expose your model to “overfitting” during the training. In this post, customer_id  columns is removed. Overfitting can make your prediction weak. More information about overfitting can be found in the topic Model Fit: Underfitting vs. Overfitting in the Amazon ML documentation.

Automation script: Renew the Amazon SageMaker model

After the CSV data is replaced and ready to use, create a new model artifact for Amazon SageMaker with the updated dataset on S3.  For renewing model artifact, you must create a new training job.  Training jobs can be run using the AWS SDK ( for example, Amazon SageMaker boto3 ) or the Amazon SageMaker Python SDK that can be installed with “pip install sagemaker” command as well as the AWS CLI for Amazon SageMaker described in this post.

In addition, consider how to smoothly renew your existing model without service impact, because your model is called by applications in real time. To do this, you need to create a new endpoint configuration first and update a current endpoint with the endpoint configuration that is just created.

#!/bin/bash
## Define variable 
REGION=$2
DTTIME=`date +%Y-%m-%d-%H-%M-%S`
ROLE="<your AmazonSageMaker-ExecutionRole>" 


# Select containers image based on region.  
case "$REGION" in
"us-west-2" )
    IMAGE="174872318107.dkr.ecr.us-west-2.amazonaws.com/linear-learner:latest"
    ;;
"us-east-1" )
    IMAGE="382416733822.dkr.ecr.us-east-1.amazonaws.com/linear-learner:latest" 
    ;;
"us-east-2" )
    IMAGE="404615174143.dkr.ecr.us-east-2.amazonaws.com/linear-learner:latest" 
    ;;
"eu-west-1" )
    IMAGE="438346466558.dkr.ecr.eu-west-1.amazonaws.com/linear-learner:latest" 
    ;;
 *)
    echo "Invalid Region Name"
    exit 1 ;  
esac

# Start training job and creating model artifact 
TRAINING_JOB_NAME=TRAIN-${DTTIME} 
S3OUTPUT="s3://<your bucket name>/model/" 
INSTANCETYPE="ml.m4.xlarge"
INSTANCECOUNT=1
VOLUMESIZE=5 
aws sagemaker create-training-job --training-job-name ${TRAINING_JOB_NAME} --region ${REGION}  --algorithm-specification TrainingImage=${IMAGE},TrainingInputMode=File --role-arn ${ROLE}  --input-data-config '[{ "ChannelName": "train", "DataSource": { "S3DataSource": { "S3DataType": "S3Prefix", "S3Uri": "s3://<your bucket name>/<datasource path>/", "S3DataDistributionType": "FullyReplicated" } }, "ContentType": "text/csv", "CompressionType": "None" , "RecordWrapperType": "None"  }]'  --output-data-config S3OutputPath=${S3OUTPUT} --resource-config  InstanceType=${INSTANCETYPE},InstanceCount=${INSTANCECOUNT},VolumeSizeInGB=${VOLUMESIZE} --stopping-condition MaxRuntimeInSeconds=120 --hyper-parameters feature_dim=20,predictor_type=binary_classifier  

# Wait until job completed 
aws sagemaker wait training-job-completed-or-stopped --training-job-name ${TRAINING_JOB_NAME}  --region ${REGION}

# Get newly created model artifact and create model
MODELARTIFACT=`aws sagemaker describe-training-job --training-job-name ${TRAINING_JOB_NAME} --region ${REGION}  --query 'ModelArtifacts.S3ModelArtifacts' --output text `
MODELNAME=MODEL-${DTTIME}
aws sagemaker create-model --region ${REGION} --model-name ${MODELNAME}  --primary-container Image=${IMAGE},ModelDataUrl=${MODELARTIFACT}  --execution-role-arn ${ROLE}

# create a new endpoint configuration 
CONFIGNAME=CONFIG-${DTTIME}
aws sagemaker  create-endpoint-config --region ${REGION} --endpoint-config-name ${CONFIGNAME}  --production-variants  VariantName=Users,ModelName=${MODELNAME},InitialInstanceCount=1,InstanceType=ml.m4.xlarge

# create or update the endpoint
STATUS=`aws sagemaker describe-endpoint --endpoint-name  ServiceEndpoint --query 'EndpointStatus' --output text --region ${REGION} `
if [[ $STATUS -ne "InService" ]] ;
then
    aws sagemaker  create-endpoint --endpoint-name  ServiceEndpoint  --endpoint-config-name ${CONFIGNAME} --region ${REGION}    
else
    aws sagemaker  update-endpoint --endpoint-name  ServiceEndpoint  --endpoint-config-name ${CONFIGNAME} --region ${REGION}
fi

Grant permission

Before you execute the script, you must grant proper permission to Data Pipeline. Data Pipeline uses the DataPipelineDefaultResourceRole role by default. I added the following policy to DataPipelineDefaultResourceRole to allow Data Pipeline to create, delete, and update the Amazon SageMaker model and data source in the script.

{
 "Version": "2012-10-17",
 "Statement": [
 {
 "Effect": "Allow",
 "Action": [
 "sagemaker:CreateTrainingJob",
 "sagemaker:DescribeTrainingJob",
 "sagemaker:CreateModel",
 "sagemaker:CreateEndpointConfig",
 "sagemaker:DescribeEndpoint",
 "sagemaker:CreateEndpoint",
 "sagemaker:UpdateEndpoint",
 "iam:PassRole"
 ],
 "Resource": "*"
 }
 ]
}

Use real-time prediction

After you deploy a model into production using Amazon SageMaker hosting services, your client applications use this API to get inferences from the model hosted at the specified endpoint. This approach is useful for interactive web, mobile, or desktop applications.

Following, I provide a simple Python code example that queries against Amazon SageMaker endpoint URL with its name (“ServiceEndpoint”) and then uses them for real-time prediction.

=== Python sample for real-time prediction ===

#!/usr/bin/env python
import boto3
import json 

client = boto3.client('sagemaker-runtime', region_name ='<your region>' )
new_customer_info = '34,10,2,4,1,2,1,1,6,3,190,1,3,4,3,-1.7,94.055,-39.8,0.715,4991.6'
response = client.invoke_endpoint(
    EndpointName='ServiceEndpoint',
    Body=new_customer_info, 
    ContentType='text/csv'
)
result = json.loads(response['Body'].read().decode())
print(result)
--- output(response) ---
{u'predictions': [{u'score': 0.7528127431869507, u'predicted_label': 1.0}]}

Solution summary

The solution takes the following steps:

  1. Data Pipeline exports DynamoDB table data into S3. The original JSON data should be kept to recover the table in the rare event that this is needed. Data Pipeline then converts JSON to CSV so that Amazon SageMaker can read the data.Note: You should select only meaningful attributes when you convert CSV. For example, if you judge that the “campaign” attribute is not correlated, you can eliminate this attribute from the CSV.
  2. Train the Amazon SageMaker model with the new data source.
  3. When a new customer comes to your site, you can judge how likely it is for this customer to subscribe to your new product based on “predictedScores” provided by Amazon SageMaker.
  4. If the new user subscribes your new product, your application must update the attribute “y” to the value 1 (for yes). This updated data is provided for the next model renewal as a new data source. It serves to improve the accuracy of your prediction. With each new entry, your application can become smarter and deliver better predictions.

Running ad hoc queries using Amazon Athena

Amazon Athena is a serverless query service that makes it easy to analyze large amounts of data stored in Amazon S3 using standard SQL. Athena is useful for examining data and collecting statistics or informative summaries about data. You can also use the powerful analytic functions of Presto, as described in the topic Aggregate Functions of Presto in the Presto documentation.

With the Data Pipeline scheduled activity, recent CSV data is always located in S3 so that you can run ad hoc queries against the data using Amazon Athena. I show this with example SQL statements following. For an in-depth description of this process, see the post Interactive SQL Queries for Data in Amazon S3 on the AWS News Blog. 

Creating an Amazon Athena table and running it

Simply, you can create an EXTERNAL table for the CSV data on S3 in Amazon Athena Management Console.

=== Table Creation ===
CREATE EXTERNAL TABLE datasource (
 age int, 
 job string, 
 marital string , 
 education string, 
 default string, 
 housing string, 
 loan string, 
 contact string, 
 month string, 
 day_of_week string, 
 duration int, 
 campaign int, 
 pdays int , 
 previous int , 
 poutcome string, 
 emp_var_rate double, 
 cons_price_idx double,
 cons_conf_idx double, 
 euribor3m double, 
 nr_employed double, 
 y int 
)
ROW FORMAT DELIMITED 
FIELDS TERMINATED BY ',' ESCAPED BY '\\' LINES TERMINATED BY '\n' 
LOCATION 's3://<your bucket name>/<datasource path>/';

The following query calculates the correlation coefficient between the target attribute and other attributes using Amazon Athena.

=== Sample Query ===

SELECT corr(age,y) AS correlation_age_and_target, 
 corr(duration,y) AS correlation_duration_and_target, 
 corr(campaign,y) AS correlation_campaign_and_target,
 corr(contact,y) AS correlation_contact_and_target
FROM ( SELECT age , duration , campaign , y , 
 CASE WHEN contact = 'telephone' THEN 1 ELSE 0 END AS contact 
 FROM datasource 
 ) datasource ;

Conclusion

In this post, I introduce an example of how to analyze data in DynamoDB by using table data in Amazon S3 to optimize DynamoDB table read capacity. You can then use the analyzed data as a new data source to train an Amazon SageMaker model for accurate real-time prediction. In addition, you can run ad hoc queries against the data on S3 using Amazon Athena. I also present how to automate these procedures by using Data Pipeline.

You can adapt this example to your specific use case at hand, and hopefully this post helps you accelerate your development. You can find more examples and use cases for Amazon SageMaker in the video AWS 2017: Introducing Amazon SageMaker on the AWS website.

 


Additional Reading

If you found this post useful, be sure to check out Serving Real-Time Machine Learning Predictions on Amazon EMR and Analyzing Data in S3 using Amazon Athena.

 


About the Author

Yong Seong Lee is a Cloud Support Engineer for AWS Big Data Services. He is interested in every technology related to data/databases and helping customers who have difficulties in using AWS services. His motto is “Enjoy life, be curious and have maximum experience.”

 

 

timeShift(GrafanaBuzz, 1w) Issue 43

Post Syndicated from Blogs on Grafana Labs Blog original https://grafana.com/blog/2018/05/04/timeshiftgrafanabuzz-1w-issue-43/

Welcome to TimeShift This week, Grafana Labs was happy to speak at and sponsor KubeCon + CloudNativeCon EU in Copenhagen, Denmark. We got to chat with a ton of Grafana users, attended amazing talks, and generally had a blast! From Grafana Labs, Goutham Veeramanchaneni gave two talks focusing on TSDB – the engine behind Prometheus, and Tom Wilkie discussed a technique for using Jsonnet for packaging and deploying “Monitoring Mixins” – extensible and customizable combinations of dashboards, alert definitions and exporters.

EC2 Fleet – Manage Thousands of On-Demand and Spot Instances with One Request

Post Syndicated from Jeff Barr original https://aws.amazon.com/blogs/aws/ec2-fleet-manage-thousands-of-on-demand-and-spot-instances-with-one-request/

EC2 Spot Fleets are really cool. You can launch a fleet of Spot Instances that spans EC2 instance types and Availability Zones without having to write custom code to discover capacity or monitor prices. You can set the target capacity (the size of the fleet) in units that are meaningful to your application and have Spot Fleet create and then maintain the fleet on your behalf. Our customers are creating Spot Fleets of all sizes. For example, one financial service customer runs Monte Carlo simulations across 10 different EC2 instance types. They routinely make requests for hundreds of thousands of vCPUs and count on Spot Fleet to give them access to massive amounts of capacity at the best possible price.

EC2 Fleet
Today we are extending and generalizing the set-it-and-forget-it model that we pioneered in Spot Fleet with EC2 Fleet, a new building block that gives you the ability to create fleets that are composed of a combination of EC2 On-Demand, Reserved, and Spot Instances with a single API call. You tell us what you need, capacity and instance-wise, and we’ll handle all the heavy lifting. We will launch, manage, monitor and scale instances as needed, without the need for scaffolding code.

You can specify the capacity of your fleet in terms of instances, vCPUs, or application-oriented units, and also indicate how much of the capacity should be fulfilled by Spot Instances. The application-oriented units allow you to specify the relative power of each EC2 instance type in a way that directly maps to the needs of your application. All three capacity specification options (instances, vCPUs, and application-oriented units) are known as weights.

I think you’ll find a number ways this feature makes managing a fleet of instances easier, and believe that you will also appreciate the team’s near-term feature roadmap of interest (more on that in a bit).

Using EC2 Fleet
There are a number of ways that you can use this feature, whether you’re running a stateless web service, a big data cluster or a continuous integration pipeline. Today I’m going to describe how you can use EC2 Fleet for genomic processing, but this is similar to workloads like risk analysis, log processing or image rendering. Modern DNA sequencers can produce multiple terabytes of raw data each day, to process that data into meaningful information in a timely fashion you need lots of processing power. I’ll be showing you how to deploy a “grid” of worker nodes that can quickly crunch through secondary analysis tasks in parallel.

Projects in genomics can use the elasticity EC2 provides to experiment and try out new pipelines on hundreds or even thousands of servers. With EC2 you can access as many cores as you need and only pay for what you use. Prior to today, you would need to use the RunInstances API or an Auto Scaling group for the On-Demand & Reserved Instance portion of your grid. To get the best price performance you’d also create and manage a Spot Fleet or multiple Spot Auto Scaling groups with different instance types if you wanted to add Spot Instances to turbo-boost your secondary analysis. Finally, to automate scaling decisions across multiple APIs and Auto Scaling groups you would need to write Lambda functions that periodically assess your grid’s progress & backlog, as well as current Spot prices – modifying your Auto Scaling Groups and Spot Fleets accordingly.

You can now replace all of this with a single EC2 Fleet, analyzing genomes at scale for as little as $1 per analysis. In my grid, each step in in the pipeline requires 1 vCPU and 4 GiB of memory, a perfect match for M4 and M5 instances with 4 GiB of memory per vCPU. I will create a fleet using M4 and M5 instances with weights that correspond to the number of vCPUs on each instance:

  • m4.16xlarge – 64 vCPUs, weight = 64
  • m5.24xlarge – 96 vCPUs, weight = 96

This is expressed in a template that looks like this:

"Overrides": [
{
  "InstanceType": "m4.16xlarge",
  "WeightedCapacity": 64,
},
{
  "InstanceType": "m5.24xlarge",
  "WeightedCapacity": 96,
},
]

By default, EC2 Fleet will select the most cost effective combination of instance types and Availability Zones (both specified in the template) using the current prices for the Spot Instances and public prices for the On-Demand Instances (if you specify instances for which you have matching RIs, your discounts will apply). The default mode takes weights into account to get the instances that have the lowest price per unit. So for my grid, fleet will find the instance that offers the lowest price per vCPU.

Now I can request capacity in terms of vCPUs, knowing EC2 Fleet will select the lowest cost option using only the instance types I’ve defined as acceptable. Also, I can specify how many vCPUs I want to launch using On-Demand or Reserved Instance capacity and how many vCPUs should be launched using Spot Instance capacity:

"TargetCapacitySpecification": {
	"TotalTargetCapacity": 2880,
	"OnDemandTargetCapacity": 960,
	"SpotTargetCapacity": 1920,
	"DefaultTargetCapacityType": "Spot"
}

The above means that I want a total of 2880 vCPUs, with 960 vCPUs fulfilled using On-Demand and 1920 using Spot. The On-Demand price per vCPU is lower for m5.24xlarge than the On-Demand price per vCPU for m4.16xlarge, so EC2 Fleet will launch 10 m5.24xlarge instances to fulfill 960 vCPUs. Based on current Spot pricing (again, on a per-vCPU basis), EC2 Fleet will choose to launch 30 m4.16xlarge instances or 20 m5.24xlarges, delivering 1920 vCPUs either way.

Putting it all together, I have a single file (fl1.json) that describes my fleet:

    "LaunchTemplateConfigs": [
        {
            "LaunchTemplateSpecification": {
                "LaunchTemplateId": "lt-0e8c754449b27161c",
                "Version": "1"
            }
        "Overrides": [
        {
          "InstanceType": "m4.16xlarge",
          "WeightedCapacity": 64,
        },
        {
          "InstanceType": "m5.24xlarge",
          "WeightedCapacity": 96,
        },
      ]
        }
    ],
    "TargetCapacitySpecification": {
        "TotalTargetCapacity": 2880,
        "OnDemandTargetCapacity": 960,
        "SpotTargetCapacity": 1920,
        "DefaultTargetCapacityType": "Spot"
    }
}

I can launch my fleet with a single command:

$ aws ec2 create-fleet --cli-input-json file://home/ec2-user/fl1.json
{
    "FleetId":"fleet-838cf4e5-fded-4f68-acb5-8c47ee1b248a"
}

My entire fleet is created within seconds and was built using 10 m5.24xlarge On-Demand Instances and 30 m4.16xlarge Spot Instances, since the current Spot price was 1.5¢ per vCPU for m4.16xlarge and 1.6¢ per vCPU for m5.24xlarge.

Now lets imagine my grid has crunched through its backlog and no longer needs the additional Spot Instances. I can then modify the size of my fleet by changing the target capacity in my fleet specification, like this:

{         
    "TotalTargetCapacity": 960,
}

Since 960 was equal to the amount of On-Demand vCPUs I had requested, when I describe my fleet I will see all of my capacity being delivered using On-Demand capacity:

"TargetCapacitySpecification": {
	"TotalTargetCapacity": 960,
	"OnDemandTargetCapacity": 960,
	"SpotTargetCapacity": 0,
	"DefaultTargetCapacityType": "Spot"
}

When I no longer need my fleet I can delete it and terminate the instances in it like this:

$ aws ec2 delete-fleets --fleet-id fleet-838cf4e5-fded-4f68-acb5-8c47ee1b248a \
  --terminate-instances   
{
    "UnsuccessfulFleetDletetions": [],
    "SuccessfulFleetDeletions": [
        {
            "CurrentFleetState": "deleted_terminating",
            "PreviousFleetState": "active",
            "FleetId": "fleet-838cf4e5-fded-4f68-acb5-8c47ee1b248a"
        }
    ]
}

Earlier I described how RI discounts apply when EC2 Fleet launches instances for which you have matching RIs, so you might be wondering how else RI customers benefit from EC2 Fleet. Let’s say that I own regional RIs for M4 instances. In my EC2 Fleet I would remove m5.24xlarge and specify m4.10xlarge and m4.16xlarge. Then when EC2 Fleet creates the grid, it will quickly find M4 capacity across the sizes and AZs I’ve specified, and my RI discounts apply automatically to this usage.

In the Works
We plan to connect EC2 Fleet and EC2 Auto Scaling groups. This will let you create a single fleet that mixed instance types and Spot, Reserved and On-Demand, while also taking advantage of EC2 Auto Scaling features such as health checks and lifecycle hooks. This integration will also bring EC2 Fleet functionality to services such as Amazon ECS, Amazon EKS, and AWS Batch that build on and make use of EC2 Auto Scaling for fleet management.

Available Now
You can create and make use of EC2 Fleets today in all public AWS Regions!

Jeff;

timeShift(GrafanaBuzz, 1w) Issue 42

Post Syndicated from Blogs on Grafana Labs Blog original https://grafana.com/blog/2018/04/27/timeshiftgrafanabuzz-1w-issue-42/

Welcome to TimeShift Grafana v5.1 Stable is available! Two of the biggest new features include a native data source for MSSQL Server and heatmap support for Prometheus. Download the latest release and checkout other new features and fixes below.
Heading to KubeCon + CloudNativeCon Europe 2018 in Copenhagen, Denmark, May 2-4? Come by our booth and say hi! Also don’t miss Tom Wilkie’s talk on Prometheus Monitoring Mixins: Using Jsonnet to Package Together Dashboards, Alerts and Exporters, and Goutham Veeramanchaneni’s talks: TSDB: The Engine behind Prometheus and TSDB: The Past, Present and the Future Latest Release We received a lot of great suggestions, bug reports and pull requests from our amazing community – Thank you all!

Congratulations to Oracle on MySQL 8.0

Post Syndicated from Michael "Monty" Widenius original http://monty-says.blogspot.com/2018/04/congratulations-to-oracle-on-mysql-80.html

Last week, Oracle announced the general availability of MySQL 8.0. This is good news for database users, as it means Oracle is still developing MySQL.

I decide to celebrate the event by doing a quick test of MySQL 8.0. Here follows a step-by-step description of my first experience with MySQL 8.0.
Note that I did the following without reading the release notes, as is what I have done with every MySQL / MariaDB release up to date; In this case it was not the right thing to do.

I pulled MySQL 8.0 from [email protected]:mysql/mysql-server.git
I was pleasantly surprised that ‘cmake . ; make‘ worked without without any compiler warnings! I even checked the used compiler options and noticed that MySQL was compiled with -Wall + several other warning flags. Good job MySQL team!

I did have a little trouble finding the mysqld binary as Oracle had moved it to ‘runtime_output_directory’; Unexpected, but no big thing.

Now it’s was time to install MySQL 8.0.

I did know that MySQL 8.0 has removed mysql_install_db, so I had to use the mysqld binary directly to install the default databases:
(I have specified datadir=/my/data3 in the /tmp/my.cnf file)

> cd runtime_output_directory
> mkdir /my/data3
> ./mysqld –defaults-file=/tmp/my.cnf –install

2018-04-22T12:38:18.332967Z 1 [ERROR] [MY-011011] [Server] Failed to find valid data directory.
2018-04-22T12:38:18.333109Z 0 [ERROR] [MY-010020] [Server] Data Dictionary initialization failed.
2018-04-22T12:38:18.333135Z 0 [ERROR] [MY-010119] [Server] Aborting

A quick look in mysqld –help –verbose output showed that the right command option is –-initialize. My bad, lets try again,

> ./mysqld –defaults-file=/tmp/my.cnf –initialize

2018-04-22T12:39:31.910509Z 0 [ERROR] [MY-010457] [Server] –initialize specified but the data directory has files in it. Aborting.
2018-04-22T12:39:31.910578Z 0 [ERROR] [MY-010119] [Server] Aborting

Now I used the right options, but still didn’t work.
I took a quick look around:

> ls /my/data3/
binlog.index

So even if the mysqld noticed that the data3 directory was wrong, it still wrote things into it.  This even if I didn’t have –log-binlog enabled in the my.cnf file. Strange, but easy to fix:

> rm /my/data3/binlog.index
> ./mysqld –defaults-file=/tmp/my.cnf –initialize

2018-04-22T12:40:45.633637Z 0 [ERROR] [MY-011071] [Server] unknown variable ‘max-tmp-tables=100’
2018-04-22T12:40:45.633657Z 0 [Warning] [MY-010952] [Server] The privilege system failed to initialize correctly. If you have upgraded your server, make sure you’re executing mysql_upgrade to correct the issue.
2018-04-22T12:40:45.633663Z 0 [ERROR] [MY-010119] [Server] Aborting

The warning about the privilege system confused me a bit, but I ignored it for the time being and removed from my configuration files the variables that MySQL 8.0 doesn’t support anymore. I couldn’t find a list of the removed variables anywhere so this was done with the trial and error method.

> ./mysqld –defaults-file=/tmp/my.cnf

2018-04-22T12:42:56.626583Z 0 [ERROR] [MY-010735] [Server] Can’t open the mysql.plugin table. Please run mysql_upgrade to create it.
2018-04-22T12:42:56.827685Z 0 [Warning] [MY-010015] [Repl] Gtid table is not ready to be used. Table ‘mysql.gtid_executed’ cannot be opened.
2018-04-22T12:42:56.838501Z 0 [Warning] [MY-010068] [Server] CA certificate ca.pem is self signed.
2018-04-22T12:42:56.848375Z 0 [Warning] [MY-010441] [Server] Failed to open optimizer cost constant tables
2018-04-22T12:42:56.848863Z 0 [ERROR] [MY-013129] [Server] A message intended for a client cannot be sent there as no client-session is attached. Therefore, we’re sending the information to the error-log instead: MY-001146 – Table ‘mysql.component’ doesn’t exist
2018-04-22T12:42:56.848916Z 0 [Warning] [MY-013129] [Server] A message intended for a client cannot be sent there as no client-session is attached. Therefore, we’re sending the information to the error-log instead: MY-003543 – The mysql.component table is missing or has an incorrect definition.
….
2018-04-22T12:42:56.854141Z 0 [System] [MY-010931] [Server] /home/my/mysql-8.0/runtime_output_directory/mysqld: ready for connections. Version: ‘8.0.11’ socket: ‘/tmp/mysql.sock’ port: 3306 Source distribution.

I figured out that if there is a single wrong variable in the configuration file, running mysqld –initialize will leave the database in an inconsistent state. NOT GOOD! I am happy I didn’t try this in a production system!

Time to start over from the beginning:

> rm -r /my/data3/*
> ./mysqld –defaults-file=/tmp/my.cnf –initialize

2018-04-22T12:44:45.548960Z 5 [Note] [MY-010454] [Server] A temporary password is generated for [email protected]: px)NaaSp?6um
2018-04-22T12:44:51.221751Z 0 [System] [MY-013170] [Server] /home/my/mysql-8.0/runtime_output_directory/mysqld (mysqld 8.0.11) initializing of server has completed

Success!

I wonder why the temporary password is so complex; It could easily have been something that one could easily remember without decreasing security, it’s temporary after all. No big deal, one can always paste it from the logs. (Side note: MariaDB uses socket authentication on many system and thus doesn’t need temporary installation passwords).

Now lets start the MySQL server for real to do some testing:

> ./mysqld –defaults-file=/tmp/my.cnf

2018-04-22T12:45:43.683484Z 0 [System] [MY-010931] [Server] /home/my/mysql-8.0/runtime_output_directory/mysqld: ready for connections. Version: ‘8.0.11’ socket: ‘/tmp/mysql.sock’ port: 3306 Source distribution.

And the lets start the client:

> ./client/mysql –socket=/tmp/mysql.sock –user=root –password=”px)NaaSp?6um”
ERROR 2059 (HY000): Plugin caching_sha2_password could not be loaded: /usr/local/mysql/lib/plugin/caching_sha2_password.so: cannot open shared object file: No such file or directory

Apparently MySQL 8.0 doesn’t work with old MySQL / MariaDB clients by default 🙁

I was testing this in a system with MariaDB installed, like all modern Linux system today, and didn’t want to use the MySQL clients or libraries.

I decided to try to fix this by changing the authentication to the native (original) MySQL authentication method.

> mysqld –skip-grant-tables

> ./client/mysql –socket=/tmp/mysql.sock –user=root
ERROR 1045 (28000): Access denied for user ‘root’@’localhost’ (using password: NO)

Apparently –skip-grant-tables is not good enough anymore. Let’s try again with:

> mysqld –skip-grant-tables –default_authentication_plugin=mysql_native_password

> ./client/mysql –socket=/tmp/mysql.sock –user=root mysql
Welcome to the MariaDB monitor. Commands end with ; or \g.
Your MySQL connection id is 7
Server version: 8.0.11 Source distribution

Great, we are getting somewhere, now lets fix “root”  to work with the old authenticaion:

MySQL [mysql]> update mysql.user set plugin=”mysql_native_password”,authentication_string=password(“test”) where user=”root”;
ERROR 1064 (42000): You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near ‘(“test”) where user=”root”‘ at line 1

A quick look in the MySQL 8.0 release notes told me that the PASSWORD() function is removed in 8.0. Why???? I don’t know how one in MySQL 8.0 is supposed to generate passwords compatible with old installations of MySQL. One could of course start an old MySQL or MariaDB version, execute the password() function and copy the result.

I decided to fix this the easy way and use an empty password:

(Update:: I later discovered that the right way would have been to use: FLUSH PRIVILEGES;  ALTER USER’ root’@’localhost’ identified by ‘test’  ; I however dislike this syntax as it has the password in clear text which is easy to grab and the command can’t be used to easily update the mysql.user table. One must also disable the –skip-grant mode to do use this)

MySQL [mysql]> update mysql.user set plugin=”mysql_native_password”,authentication_string=”” where user=”root”;
Query OK, 1 row affected (0.077 sec)
Rows matched: 1 Changed: 1 Warnings: 0
 
I restarted mysqld:
> mysqld –default_authentication_plugin=mysql_native_password

> ./client/mysql –user=root –password=”” mysql
ERROR 1862 (HY000): Your password has expired. To log in you must change it using a client that supports expired passwords.

Ouch, forgot that. Lets try again:

> mysqld –skip-grant-tables –default_authentication_plugin=mysql_native_password

> ./client/mysql –user=root –password=”” mysql
MySQL [mysql]> update mysql.user set password_expired=”N” where user=”root”;

Now restart and test worked:

> ./mysqld –default_authentication_plugin=mysql_native_password

>./client/mysql –user=root –password=”” mysql

Finally I had a working account that I can use to create other users!

When looking at mysqld –help –verbose again. I noticed the option:

–initialize-insecure
Create the default database and exit. Create a super user
with empty password.

I decided to check if this would have made things easier:

> rm -r /my/data3/*
> ./mysqld –defaults-file=/tmp/my.cnf –initialize-insecure

2018-04-22T13:18:06.629548Z 5 [Warning] [MY-010453] [Server] [email protected] is created with an empty password ! Please consider switching off the –initialize-insecure option.

Hm. Don’t understand the warning as–initialize-insecure is not an option that one would use more than one time and thus nothing one would ‘switch off’.

> ./mysqld –defaults-file=/tmp/my.cnf

> ./client/mysql –user=root –password=”” mysql
ERROR 2059 (HY000): Plugin caching_sha2_password could not be loaded: /usr/local/mysql/lib/plugin/caching_sha2_password.so: cannot open shared object file: No such file or directory

Back to the beginning 🙁

To get things to work with old clients, one has to initialize the database with:
> ./mysqld –defaults-file=/tmp/my.cnf –initialize-insecure –default_authentication_plugin=mysql_native_password

Now I finally had MySQL 8.0 up and running and thought I would take it up for a spin by running the “standard” MySQL/MariaDB sql-bench test suite. This was removed in MySQL 5.7, but as I happened to have MariaDB 10.3 installed, I decided to run it from there.

sql-bench is a single threaded benchmark that measures the “raw” speed for some common operations. It gives you the ‘maximum’ performance for a single query. Its different from other benchmarks that measures the maximum throughput when you have a lot of users, but sql-bench still tells you a lot about what kind of performance to expect from the database.

I tried first to be clever and create the “test” database, that I needed for sql-bench, with
> mkdir /my/data3/test

but when I tried to run the benchmark, MySQL 8.0 complained that the test database didn’t exist.

MySQL 8.0 has gone away from the original concept of MySQL where the user can easily
create directories and copy databases into the database directory. This may have serious
implication for anyone doing backup of databases and/or trying to restore a backup with normal OS commands.

I created the ‘test’ database with mysqladmin and then tried to run sql-bench:

> ./run-all-tests –user=root

The first run failed in test-ATIS:

Can’t execute command ‘create table class_of_service (class_code char(2) NOT NULL,rank tinyint(2) NOT NULL,class_description char(80) NOT NULL,PRIMARY KEY (class_code))’
Error: You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near ‘rank tinyint(2) NOT NULL,class_description char(80) NOT NULL,PRIMARY KEY (class_’ at line 1

This happened because ‘rank‘ is now a reserved word in MySQL 8.0. This is also reserved in ANSI SQL, but I don’t know of any other database that has failed to run test-ATIS before. I have in the past run it against Oracle, PostgreSQL, Mimer, MSSQL etc without any problems.

MariaDB also has ‘rank’ as a keyword in 10.2 and 10.3 but one can still use it as an identifier.

I fixed test-ATIS and then managed to run all tests on MySQL 8.0.

I did run the test both with MySQL 8.0 and MariaDB 10.3 with the InnoDB storage engine and by having identical values for all InnoDB variables, table-definition-cache and table-open-cache. I turned off performance schema for both databases. All test are run with a user with an empty password (to keep things comparable and because it’s was too complex to generate a password in MySQL 8.0)

The result are as follows
Results per test in seconds:

Operation         |MariaDB|MySQL-8|

———————————–
ATIS              | 153.00| 228.00|
alter-table       |  92.00| 792.00|
big-tables        | 990.00|2079.00|
connect           | 186.00| 227.00|
create            | 575.00|4465.00|
insert            |4552.00|8458.00|
select            | 333.00| 412.00|
table-elimination |1900.00|3916.00|
wisconsin         | 272.00| 590.00|
———————————–

This is of course just a first view of the performance of MySQL 8.0 in a single user environment. Some reflections about the results:

  • Alter-table test is slower (as expected) in 8.0 as some of the alter tests benefits of the instant add column in MariaDB 10.3.
  • connect test is also better for MariaDB as we put a lot of efforts to speed this up in MariaDB 10.2
  • table-elimination shows an optimization in MariaDB for the  Anchor table model, which MySQL doesn’t have.
  • CREATE and DROP TABLE is almost 8 times slower in MySQL 8.0 than in MariaDB 10.3. I assume this is the cost of ‘atomic DDL’. This may also cause performance problems for any thread using the data dictionary when another thread is creating/dropping tables.
  • When looking at the individual test results, MySQL 8.0 was slower in almost every test, in many significantly slower.
  • The only test where MySQL was faster was “update_with_key_prefix”. I checked this and noticed that there was a bug in the test and the columns was updated to it’s original value (which should be instant with any storage engine). This is an old bug that MySQL has found and fixed and that we have not been aware of in the test or in MariaDB.
  • While writing this, I noticed that MySQL 8.0 is now using utf8mb4 as the default character set instead of latin1. This may affect some of the benchmarks slightly (not much as most tests works with numbers and Oracle claims that utf8mb4 is only 20% slower than latin1), but needs to be verified.
  • Oracle claims that MySQL 8.0 is much faster on multi user benchmarks. The above test indicates that they may have done this by sacrificing single user performance.
  •  We need to do more and many different benchmarks to better understand exactly what is going on. Stay tuned!

Short summary of my first run with MySQL 8.0:

  • Using the new caching_sha2_password authentication as default for new installation is likely to cause a lot of problems for users. No old application will be able to use MySQL 8.0, installed with default options, without moving to MySQL’s client libraries. While working on this blog I saw MySQL users complain on IRC that not even MySQL Workbench can authenticate with MySQL 8.0. This is the first time in MySQL’s history where such an incompatible change has ever been done!
  • Atomic DDL is a good thing (We plan to have this in MariaDB 10.4), but it should not have such a drastic impact on performance. I am also a bit skeptical of MySQL 8.0 having just one copy of the data dictionary as if this gets corrupted you will lose all your data. (Single point of failure)
  • MySQL 8.0 has several new reserved words and has removed a lot of variables, which makes upgrades hard. Before upgrading to MySQL 8.0 one has to check all one’s databases and applications to ensure that there are no conflicts.
  • As my test above shows, if you have a single deprecated variable in your configuration files, the installation of MySQL will abort and can leave the database in inconsistent state. I did of course my tests by installing into an empty data dictionary, but one can assume that some of the problems may also happen when upgrading an old installation.

Conclusions:
In many ways, MySQL 8.0 has caught up with some earlier versions of MariaDB. For instance, in MariaDB 10.0, we introduced roles (four years ago). In MariaDB 10.1, we introduced encrypted redo/undo logs (three years ago). In MariaDB 10.2, we introduced window functions and CTEs (a year ago). However, some catch-up of MariaDB Server 10.2 features still remains for MySQL (such as check constraints, binlog compression, and log-based rollback).

MySQL 8.0 has a few new interesting features (mostly Atomic DDL and JSON TABLE functions), but at the same time MySQL has strayed away from some of the fundamental corner stone principles of MySQL:

From the start of the first version of MySQL in 1995, all development has been focused around 3 core principles:

  • Ease of use
  • Performance
  • Stability

With MySQL 8.0, Oracle has sacrifices 2 of 3 of these.

In addition (as part of ease of use), while I was working on MySQL, we did our best to ensure that the following should hold:

  • Upgrades should be trivial
  • Things should be kept compatible, if possible (don’t remove features/options/functions that are used)
  • Minimize reserved words, don’t remove server variables
  • One should be able to use normal OS commands to create and drop databases, copy and move tables around within the same system or between different systems. With 8.0 and data dictionary taking backups of specific tables will be hard, even if the server is not running.
  • mysqldump should always be usable backups and to move to new releases
  • Old clients and application should be able to use ‘any’ MySQL server version unchanged. (Some Oracle client libraries, like C++, by default only supports the new X protocol and can thus not be used with older MySQL or any MariaDB version)

We plan to add a data dictionary to MariaDB 10.4 or MariaDB 10.5, but in a way to not sacrifice any of the above principles!

The competition between MySQL and MariaDB is not just about a tactical arms race on features. It’s about design philosophy, or strategic vision, if you will.

This shows in two main ways: our respective view of the Storage Engine structure, and of the top-level direction of the roadmap.

On the Storage Engine side, MySQL is converging on InnoDB, even for clustering and partitioning. In doing so, they are abandoning the advantages of multiple ways of storing data. By contrast, MariaDB sees lots of value in the Storage Engine architecture: MariaDB Server 10.3 will see the general availability of MyRocks (for write-intensive workloads) and Spider (for scalable workloads). On top of that, we have ColumnStore for analytical workloads. One can use the CONNECT engine to join with other databases. The use of different storage engines for different workloads and different hardware is a competitive differentiator, now more than ever.

On the roadmap side, MySQL is carefully steering clear of features that close the gap between MySQL and Oracle. MariaDB has no such constraints. With MariaDB 10.3, we are introducing PL/SQL compatibility (Oracle’s stored procedures) and AS OF (built-in system versioned tables with point-in-time querying). For both of those features, MariaDB is the first Open Source database doing so. I don’t except Oracle to provide any of the above features in MySQL!

Also on the roadmap side, MySQL is not working with the ecosystem in extending the functionality. In 2017, MariaDB accepted more code contributions in one year, than MySQL has done during its entire lifetime, and the rate is increasing!

I am sure that the experience I had with testing MySQL 8.0 would have been significantly better if MySQL would have an open development model where the community could easily participate in developing and testing MySQL continuously. Most of the confusing error messages and strange behavior would have been found and fixed long before the GA release.

Before upgrading to MySQL 8.0 please read https://dev.mysql.com/doc/refman/8.0/en/upgrading-from-previous-series.html to see what problems you can run into! Don’t expect that old installations or applications will work out of the box without testing as a lot of features and options has been removed (query cache, partition of myisam tables etc)! You probably also have to revise your backup methods, especially if you want to ever restore just a few tables. (With 8.0, I don’t know how this can be easily done).

According to the MySQL 8.0 release notes, one can’t use mysqldump to copy a database to MySQL 8.0. One has to first to move to a MySQL 5.7 GA version (with mysqldump, as recommended by Oracle) and then to MySQL 8.0 with in-place update. I assume this means that all old mysqldump backups are useless for MySQL 8.0?

MySQL 8.0 seams to be a one way street to an unknown future. Up to MySQL 5.7 it has been trivial to move to MariaDB and one could always move back to MySQL with mysqldump. All MySQL client libraries has worked with MariaDB and all MariaDB client libraries has worked with MySQL. With MySQL 8.0 this has changed in the wrong direction.

As long as you are using MySQL 5.7 and below you have choices for your future, after MySQL 8.0 you have very little choice. But don’t despair, as MariaDB will always be able to load a mysqldump file and it’s very easy to upgrade your old MySQL installation to MariaDB 🙂

I wish you good luck to try MySQL 8.0 (and also the upcoming MariaDB 10.3)!

Implement continuous integration and delivery of serverless AWS Glue ETL applications using AWS Developer Tools

Post Syndicated from Prasad Alle original https://aws.amazon.com/blogs/big-data/implement-continuous-integration-and-delivery-of-serverless-aws-glue-etl-applications-using-aws-developer-tools/

AWS Glue is an increasingly popular way to develop serverless ETL (extract, transform, and load) applications for big data and data lake workloads. Organizations that transform their ETL applications to cloud-based, serverless ETL architectures need a seamless, end-to-end continuous integration and continuous delivery (CI/CD) pipeline: from source code, to build, to deployment, to product delivery. Having a good CI/CD pipeline can help your organization discover bugs before they reach production and deliver updates more frequently. It can also help developers write quality code and automate the ETL job release management process, mitigate risk, and more.

AWS Glue is a fully managed data catalog and ETL service. It simplifies and automates the difficult and time-consuming tasks of data discovery, conversion, and job scheduling. AWS Glue crawls your data sources and constructs a data catalog using pre-built classifiers for popular data formats and data types, including CSV, Apache Parquet, JSON, and more.

When you are developing ETL applications using AWS Glue, you might come across some of the following CI/CD challenges:

  • Iterative development with unit tests
  • Continuous integration and build
  • Pushing the ETL pipeline to a test environment
  • Pushing the ETL pipeline to a production environment
  • Testing ETL applications using real data (live test)
  • Exploring and validating data

In this post, I walk you through a solution that implements a CI/CD pipeline for serverless AWS Glue ETL applications supported by AWS Developer Tools (including AWS CodePipeline, AWS CodeCommit, and AWS CodeBuild) and AWS CloudFormation.

Solution overview

The following diagram shows the pipeline workflow:

This solution uses AWS CodePipeline, which lets you orchestrate and automate the test and deploy stages for ETL application source code. The solution consists of a pipeline that contains the following stages:

1.) Source Control: In this stage, the AWS Glue ETL job source code and the AWS CloudFormation template file for deploying the ETL jobs are both committed to version control. I chose to use AWS CodeCommit for version control.

To get the ETL job source code and AWS CloudFormation template, download the gluedemoetl.zip file. This solution is developed based on a previous post, Build a Data Lake Foundation with AWS Glue and Amazon S3.

2.) LiveTest: In this stage, all resources—including AWS Glue crawlers, jobs, S3 buckets, roles, and other resources that are required for the solution—are provisioned, deployed, live tested, and cleaned up.

The LiveTest stage includes the following actions:

  • Deploy: In this action, all the resources that are required for this solution (crawlers, jobs, buckets, roles, and so on) are provisioned and deployed using an AWS CloudFormation template.
  • AutomatedLiveTest: In this action, all the AWS Glue crawlers and jobs are executed and data exploration and validation tests are performed. These validation tests include, but are not limited to, record counts in both raw tables and transformed tables in the data lake and any other business validations. I used AWS CodeBuild for this action.
  • LiveTestApproval: This action is included for the cases in which a pipeline administrator approval is required to deploy/promote the ETL applications to the next stage. The pipeline pauses in this action until an administrator manually approves the release.
  • LiveTestCleanup: In this action, all the LiveTest stage resources, including test crawlers, jobs, roles, and so on, are deleted using the AWS CloudFormation template. This action helps minimize cost by ensuring that the test resources exist only for the duration of the AutomatedLiveTest and LiveTestApproval

3.) DeployToProduction: In this stage, all the resources are deployed using the AWS CloudFormation template to the production environment.

Try it out

This code pipeline takes approximately 20 minutes to complete the LiveTest test stage (up to the LiveTest approval stage, in which manual approval is required).

To get started with this solution, choose Launch Stack:

This creates the CI/CD pipeline with all of its stages, as described earlier. It performs an initial commit of the sample AWS Glue ETL job source code to trigger the first release change.

In the AWS CloudFormation console, choose Create. After the template finishes creating resources, you see the pipeline name on the stack Outputs tab.

After that, open the CodePipeline console and select the newly created pipeline. Initially, your pipeline’s CodeCommit stage shows that the source action failed.

Allow a few minutes for your new pipeline to detect the initial commit applied by the CloudFormation stack creation. As soon as the commit is detected, your pipeline starts. You will see the successful stage completion status as soon as the CodeCommit source stage runs.

In the CodeCommit console, choose Code in the navigation pane to view the solution files.

Next, you can watch how the pipeline goes through the LiveTest stage of the deploy and AutomatedLiveTest actions, until it finally reaches the LiveTestApproval action.

At this point, if you check the AWS CloudFormation console, you can see that a new template has been deployed as part of the LiveTest deploy action.

At this point, make sure that the AWS Glue crawlers and the AWS Glue job ran successfully. Also check whether the corresponding databases and external tables have been created in the AWS Glue Data Catalog. Then verify that the data is validated using Amazon Athena, as shown following.

Open the AWS Glue console, and choose Databases in the navigation pane. You will see the following databases in the Data Catalog:

Open the Amazon Athena console, and run the following queries. Verify that the record counts are matching.

SELECT count(*) FROM "nycitytaxi_gluedemocicdtest"."data";
SELECT count(*) FROM "nytaxiparquet_gluedemocicdtest"."datalake";

The following shows the raw data:

The following shows the transformed data:

The pipeline pauses the action until the release is approved. After validating the data, manually approve the revision on the LiveTestApproval action on the CodePipeline console.

Add comments as needed, and choose Approve.

The LiveTestApproval stage now appears as Approved on the console.

After the revision is approved, the pipeline proceeds to use the AWS CloudFormation template to destroy the resources that were deployed in the LiveTest deploy action. This helps reduce cost and ensures a clean test environment on every deployment.

Production deployment is the final stage. In this stage, all the resources—AWS Glue crawlers, AWS Glue jobs, Amazon S3 buckets, roles, and so on—are provisioned and deployed to the production environment using the AWS CloudFormation template.

After successfully running the whole pipeline, feel free to experiment with it by changing the source code stored on AWS CodeCommit. For example, if you modify the AWS Glue ETL job to generate an error, it should make the AutomatedLiveTest action fail. Or if you change the AWS CloudFormation template to make its creation fail, it should affect the LiveTest deploy action. The objective of the pipeline is to guarantee that all changes that are deployed to production are guaranteed to work as expected.

Conclusion

In this post, you learned how easy it is to implement CI/CD for serverless AWS Glue ETL solutions with AWS developer tools like AWS CodePipeline and AWS CodeBuild at scale. Implementing such solutions can help you accelerate ETL development and testing at your organization.

If you have questions or suggestions, please comment below.

 


Additional Reading

If you found this post useful, be sure to check out Implement Continuous Integration and Delivery of Apache Spark Applications using AWS and Build a Data Lake Foundation with AWS Glue and Amazon S3.

 


About the Authors

Prasad Alle is a Senior Big Data Consultant with AWS Professional Services. He spends his time leading and building scalable, reliable Big data, Machine learning, Artificial Intelligence and IoT solutions for AWS Enterprise and Strategic customers. His interests extend to various technologies such as Advanced Edge Computing, Machine learning at Edge. In his spare time, he enjoys spending time with his family.

 
Luis Caro is a Big Data Consultant for AWS Professional Services. He works with our customers to provide guidance and technical assistance on big data projects, helping them improving the value of their solutions when using AWS.