Tag Archives: sql

Security updates for Tuesday

Post Syndicated from ris original https://lwn.net/Articles/755205/rss

Security updates have been issued by Debian (gitlab and packagekit), Fedora (glibc, postgresql, and webkitgtk4), Oracle (java-1.7.0-openjdk, java-1.8.0-openjdk, kernel, libvirt, and qemu-kvm), Red Hat (java-1.7.0-openjdk, kernel-rt, qemu-kvm, and qemu-kvm-rhev), SUSE (openjpeg2, qemu, and squid3), and Ubuntu (kernel, linux, linux-aws, linux-azure, linux-gcp, linux-kvm, linux-oem, linux, linux-aws, linux-kvm,, linux-hwe, linux-azure, linux-gcp, linux-oem, linux-lts-trusty, linux-lts-xenial, linux-aws, qemu, and xdg-utils).

Haas: Built-in Sharding for PostgreSQL

Post Syndicated from corbet original https://lwn.net/Articles/754790/rss

Robert Haas writes
about the sharding capabilities
that PostgreSQL will someday have.
The capabilities already added are independently useful, but I
believe that some time in the next few years we’re going to reach a tipping
point. Indeed, I think in a certain sense we already have. Just a few years
ago, there was serious debate about whether PostgreSQL would ever have
built-in sharding. Today, the question is about exactly which features are
still needed.

Security updates for Wednesday

Post Syndicated from ris original https://lwn.net/Articles/754653/rss

Security updates have been issued by CentOS (dhcp), Debian (xen), Fedora (dhcp, flac, kubernetes, leptonica, libgxps, LibRaw, matrix-synapse, mingw-LibRaw, mysql-mmm, patch, seamonkey, webkitgtk4, and xen), Mageia (389-ds-base, exempi, golang, graphite2, libpam4j, libraw, libsndfile, libtiff, perl, quassel, spring-ldap, util-linux, and wget), Oracle (dhcp and kernel), Red Hat (389-ds-base, chromium-browser, dhcp, docker-latest, firefox, kernel-alt, libvirt, qemu-kvm, redhat-vertualization-host, rh-haproxy18-haproxy, and rhvm-appliance), Scientific Linux (389-ds-base, dhcp, firefox, libvirt, and qemu-kvm), and Ubuntu (poppler).

Security updates for Monday

Post Syndicated from ris original https://lwn.net/Articles/754430/rss

Security updates have been issued by Debian (tiff and tiff3), Fedora (glusterfs, kernel, libgxps, LibRaw, postgresql, seamonkey, webkit2gtk3, wget, and xen), Mageia (afflib, flash-player-plugin, imagemagick, qpdf, and transmission), openSUSE (Chromium, opencv, and xen), SUSE (kernel), and Ubuntu (firefox).

timeShift(GrafanaBuzz, 1w) Issue 44

Post Syndicated from Blogs on Grafana Labs Blog original https://grafana.com/blog/2018/05/11/timeshiftgrafanabuzz-1w-issue-44/

Welcome to TimeShift Grafana v5.1.2 is available and includes an important bug fix for MySQL, plus an update for GDPR compliance. See below for more details and the full release notes.
Also, KubeCon + CloudNativeCon Europe 2018 videos are now available including talks from members of the Grafana Labs team! Check out these talks below.
If you would like your article highlighted in our weekly roundup, feel free to send me an email at [email protected]

Amazon Aurora Backtrack – Turn Back Time

Post Syndicated from Jeff Barr original https://aws.amazon.com/blogs/aws/amazon-aurora-backtrack-turn-back-time/

We’ve all been there! You need to make a quick, seemingly simple fix to an important production database. You compose the query, give it a once-over, and let it run. Seconds later you realize that you forgot the WHERE clause, dropped the wrong table, or made another serious mistake, and interrupt the query, but the damage has been done. You take a deep breath, whistle through your teeth, wish that reality came with an Undo option. Now what?

New Amazon Aurora Backtrack
Today I would like to tell you about the new backtrack feature for Amazon Aurora. This is as close as we can come, given present-day technology, to an Undo option for reality.

This feature can be enabled at launch time for all newly-launched Aurora database clusters. To enable it, you simply specify how far back in time you might want to rewind, and use the database as usual (this is on the Configure advanced settings page):

Aurora uses a distributed, log-structured storage system (read Design Considerations for High Throughput Cloud-Native Relational Databases to learn a lot more); each change to your database generates a new log record, identified by a Log Sequence Number (LSN). Enabling the backtrack feature provisions a FIFO buffer in the cluster for storage of LSNs. This allows for quick access and recovery times measured in seconds.

After that regrettable moment when all seems lost, you simply pause your application, open up the Aurora Console, select the cluster, and click Backtrack DB cluster:

Then you select Backtrack and choose the point in time just before your epic fail, and click Backtrack DB cluster:

Then you wait for the rewind to take place, unpause your application and proceed as if nothing had happened. When you initiate a backtrack, Aurora will pause the database, close any open connections, drop uncommitted writes, and wait for the backtrack to complete. Then it will resume normal operation and being to accept requests. The instance state will be backtracking while the rewind is underway:

The console will let you know when the backtrack is complete:

If it turns out that you went back a bit too far, you can backtrack to a later time. Other Aurora features such as cloning, backups, and restores continue to work on an instance that has been configured for backtrack.

I’m sure you can think of some creative and non-obvious use cases for this cool new feature. For example, you could use it to restore a test database after running a test that makes changes to the database. You can initiate the restoration from the API or the CLI, making it easy to integrate into your existing test framework.

Things to Know
This option applies to newly created MySQL-compatible Aurora database clusters and to MySQL-compatible clusters that have been restored from a backup. You must opt-in when you create or restore a cluster; you cannot enable it for a running cluster.

This feature is available now in all AWS Regions where Amazon Aurora runs, and you can start using it today.

Jeff;

AWS Online Tech Talks – May and Early June 2018

Post Syndicated from Devin Watson original https://aws.amazon.com/blogs/aws/aws-online-tech-talks-may-and-early-june-2018/

AWS Online Tech Talks – May and Early June 2018  

Join us this month to learn about some of the exciting new services and solution best practices at AWS. We also have our first re:Invent 2018 webinar series, “How to re:Invent”. Sign up now to learn more, we look forward to seeing you.

Note – All sessions are free and in Pacific Time.

Tech talks featured this month:

Analytics & Big Data

May 21, 2018 | 11:00 AM – 11:45 AM PT Integrating Amazon Elasticsearch with your DevOps Tooling – Learn how you can easily integrate Amazon Elasticsearch Service into your DevOps tooling and gain valuable insight from your log data.

May 23, 2018 | 11:00 AM – 11:45 AM PTData Warehousing and Data Lake Analytics, Together – Learn how to query data across your data warehouse and data lake without moving data.

May 24, 2018 | 11:00 AM – 11:45 AM PTData Transformation Patterns in AWS – Discover how to perform common data transformations on the AWS Data Lake.

Compute

May 29, 2018 | 01:00 PM – 01:45 PM PT – Creating and Managing a WordPress Website with Amazon Lightsail – Learn about Amazon Lightsail and how you can create, run and manage your WordPress websites with Amazon’s simple compute platform.

May 30, 2018 | 01:00 PM – 01:45 PM PTAccelerating Life Sciences with HPC on AWS – Learn how you can accelerate your Life Sciences research workloads by harnessing the power of high performance computing on AWS.

Containers

May 24, 2018 | 01:00 PM – 01:45 PM PT – Building Microservices with the 12 Factor App Pattern on AWS – Learn best practices for building containerized microservices on AWS, and how traditional software design patterns evolve in the context of containers.

Databases

May 21, 2018 | 01:00 PM – 01:45 PM PTHow to Migrate from Cassandra to Amazon DynamoDB – Get the benefits, best practices and guides on how to migrate your Cassandra databases to Amazon DynamoDB.

May 23, 2018 | 01:00 PM – 01:45 PM PT5 Hacks for Optimizing MySQL in the Cloud – Learn how to optimize your MySQL databases for high availability, performance, and disaster resilience using RDS.

DevOps

May 23, 2018 | 09:00 AM – 09:45 AM PT.NET Serverless Development on AWS – Learn how to build a modern serverless application in .NET Core 2.0.

Enterprise & Hybrid

May 22, 2018 | 11:00 AM – 11:45 AM PTHybrid Cloud Customer Use Cases on AWS – Learn how customers are leveraging AWS hybrid cloud capabilities to easily extend their datacenter capacity, deliver new services and applications, and ensure business continuity and disaster recovery.

IoT

May 31, 2018 | 11:00 AM – 11:45 AM PTUsing AWS IoT for Industrial Applications – Discover how you can quickly onboard your fleet of connected devices, keep them secure, and build predictive analytics with AWS IoT.

Machine Learning

May 22, 2018 | 09:00 AM – 09:45 AM PTUsing Apache Spark with Amazon SageMaker – Discover how to use Apache Spark with Amazon SageMaker for training jobs and application integration.

May 24, 2018 | 09:00 AM – 09:45 AM PTIntroducing AWS DeepLens – Learn how AWS DeepLens provides a new way for developers to learn machine learning by pairing the physical device with a broad set of tutorials, examples, source code, and integration with familiar AWS services.

Management Tools

May 21, 2018 | 09:00 AM – 09:45 AM PTGaining Better Observability of Your VMs with Amazon CloudWatch – Learn how CloudWatch Agent makes it easy for customers like Rackspace to monitor their VMs.

Mobile

May 29, 2018 | 11:00 AM – 11:45 AM PT – Deep Dive on Amazon Pinpoint Segmentation and Endpoint Management – See how segmentation and endpoint management with Amazon Pinpoint can help you target the right audience.

Networking

May 31, 2018 | 09:00 AM – 09:45 AM PTMaking Private Connectivity the New Norm via AWS PrivateLink – See how PrivateLink enables service owners to offer private endpoints to customers outside their company.

Security, Identity, & Compliance

May 30, 2018 | 09:00 AM – 09:45 AM PT – Introducing AWS Certificate Manager Private Certificate Authority (CA) – Learn how AWS Certificate Manager (ACM) Private Certificate Authority (CA), a managed private CA service, helps you easily and securely manage the lifecycle of your private certificates.

June 1, 2018 | 09:00 AM – 09:45 AM PTIntroducing AWS Firewall Manager – Centrally configure and manage AWS WAF rules across your accounts and applications.

Serverless

May 22, 2018 | 01:00 PM – 01:45 PM PTBuilding API-Driven Microservices with Amazon API Gateway – Learn how to build a secure, scalable API for your application in our tech talk about API-driven microservices.

Storage

May 30, 2018 | 11:00 AM – 11:45 AM PTAccelerate Productivity by Computing at the Edge – Learn how AWS Snowball Edge support for compute instances helps accelerate data transfers, execute custom applications, and reduce overall storage costs.

June 1, 2018 | 11:00 AM – 11:45 AM PTLearn to Build a Cloud-Scale Website Powered by Amazon EFS – Technical deep dive where you’ll learn tips and tricks for integrating WordPress, Drupal and Magento with Amazon EFS.

 

 

 

 

Creating a 1.3 Million vCPU Grid on AWS using EC2 Spot Instances and TIBCO GridServer

Post Syndicated from Jeff Barr original https://aws.amazon.com/blogs/aws/creating-a-1-3-million-vcpu-grid-on-aws-using-ec2-spot-instances-and-tibco-gridserver/

Many of my colleagues are fortunate to be able to spend a good part of their day sitting down with and listening to our customers, doing their best to understand ways that we can better meet their business and technology needs. This information is treated with extreme care and is used to drive the roadmap for new services and new features.

AWS customers in the financial services industry (often abbreviated as FSI) are looking ahead to the Fundamental Review of Trading Book (FRTB) regulations that will come in to effect between 2019 and 2021. Among other things, these regulations mandate a new approach to the “value at risk” calculations that each financial institution must perform in the four hour time window after trading ends in New York and begins in Tokyo. Today, our customers report this mission-critical calculation consumes on the order of 200,000 vCPUs, growing to between 400K and 800K vCPUs in order to meet the FRTB regulations. While there’s still some debate about the magnitude and frequency with which they’ll need to run this expanded calculation, the overall direction is clear.

Building a Big Grid
In order to make sure that we are ready to help our FSI customers meet these new regulations, we worked with TIBCO to set up and run a proof of concept grid in the AWS Cloud. The periodic nature of the calculation, along with the amount of processing power and storage needed to run it to completion within four hours, make it a great fit for an environment where a vast amount of cost-effective compute power is available on an on-demand basis.

Our customers are already using the TIBCO GridServer on-premises and want to use it in the cloud. This product is designed to run grids at enterprise scale. It runs apps in a virtualized fashion, and accepts requests for resources, dynamically provisioning them on an as-needed basis. The cloud version supports Amazon Linux as well as the PostgreSQL-compatible edition of Amazon Aurora.

Working together with TIBCO, we set out to create a grid that was substantially larger than the current high-end prediction of 800K vCPUs, adding a 50% safety factor and then rounding up to reach 1.3 million vCPUs (5x the size of the largest on-premises grid). With that target in mind, the account limits were raised as follows:

  • Spot Instance Limit – 120,000
  • EBS Volume Limit – 120,000
  • EBS Capacity Limit – 2 PB

If you plan to create a grid of this size, you should also bring your friendly local AWS Solutions Architect into the loop as early as possible. They will review your plans, provide you with architecture guidance, and help you to schedule your run.

Running the Grid
We hit the Go button and launched the grid, watching as it bid for and obtained Spot Instances, each of which booted, initialized, and joined the grid within two minutes. The test workload used the Strata open source analytics & market risk library from OpenGamma and was set up with their assistance.

The grid grew to 61,299 Spot Instances (1.3 million vCPUs drawn from 34 instance types spanning 3 generations of EC2 hardware) as planned, with just 1,937 instances reclaimed and automatically replaced during the run, and cost $30,000 per hour to run, at an average hourly cost of $0.078 per vCPU. If the same instances had been used in On-Demand form, the hourly cost to run the grid would have been approximately $93,000.

Despite the scale of the grid, prices for the EC2 instances did not move during the bidding process. This is due to the overall size of the AWS Cloud and the smooth price change model that we launched late last year.

To give you a sense of the compute power, we computed that this grid would have taken the #1 position on the TOP 500 supercomputer list in November 2007 by a considerable margin, and the #2 position in June 2008. Today, it would occupy position #360 on the list.

I hope that you enjoyed this AWS success story, and that it gives you an idea of the scale that you can achieve in the cloud!

Jeff;

Analyze data in Amazon DynamoDB using Amazon SageMaker for real-time prediction

Post Syndicated from YongSeong Lee original https://aws.amazon.com/blogs/big-data/analyze-data-in-amazon-dynamodb-using-amazon-sagemaker-for-real-time-prediction/

Many companies across the globe use Amazon DynamoDB to store and query historical user-interaction data. DynamoDB is a fast NoSQL database used by applications that need consistent, single-digit millisecond latency.

Often, customers want to turn their valuable data in DynamoDB into insights by analyzing a copy of their table stored in Amazon S3. Doing this separates their analytical queries from their low-latency critical paths. This data can be the primary source for understanding customers’ past behavior, predicting future behavior, and generating downstream business value. Customers often turn to DynamoDB because of its great scalability and high availability. After a successful launch, many customers want to use the data in DynamoDB to predict future behaviors or provide personalized recommendations.

DynamoDB is a good fit for low-latency reads and writes, but it’s not practical to scan all data in a DynamoDB database to train a model. In this post, I demonstrate how you can use DynamoDB table data copied to Amazon S3 by AWS Data Pipeline to predict customer behavior. I also demonstrate how you can use this data to provide personalized recommendations for customers using Amazon SageMaker. You can also run ad hoc queries using Amazon Athena against the data. DynamoDB recently released on-demand backups to create full table backups with no performance impact. However, it’s not suitable for our purposes in this post, so I chose AWS Data Pipeline instead to create managed backups are accessible from other services.

To do this, I describe how to read the DynamoDB backup file format in Data Pipeline. I also describe how to convert the objects in S3 to a CSV format that Amazon SageMaker can read. In addition, I show how to schedule regular exports and transformations using Data Pipeline. The sample data used in this post is from Bank Marketing Data Set of UCI.

The solution that I describe provides the following benefits:

  • Separates analytical queries from production traffic on your DynamoDB table, preserving your DynamoDB read capacity units (RCUs) for important production requests
  • Automatically updates your model to get real-time predictions
  • Optimizes for performance (so it doesn’t compete with DynamoDB RCUs after the export) and for cost (using data you already have)
  • Makes it easier for developers of all skill levels to use Amazon SageMaker

All code and data set in this post are available in this .zip file.

Solution architecture

The following diagram shows the overall architecture of the solution.

The steps that data follows through the architecture are as follows:

  1. Data Pipeline regularly copies the full contents of a DynamoDB table as JSON into an S3
  2. Exported JSON files are converted to comma-separated value (CSV) format to use as a data source for Amazon SageMaker.
  3. Amazon SageMaker renews the model artifact and update the endpoint.
  4. The converted CSV is available for ad hoc queries with Amazon Athena.
  5. Data Pipeline controls this flow and repeats the cycle based on the schedule defined by customer requirements.

Building the auto-updating model

This section discusses details about how to read the DynamoDB exported data in Data Pipeline and build automated workflows for real-time prediction with a regularly updated model.

Download sample scripts and data

Before you begin, take the following steps:

  1. Download sample scripts in this .zip file.
  2. Unzip the src.zip file.
  3. Find the automation_script.sh file and edit it for your environment. For example, you need to replace 's3://<your bucket>/<datasource path>/' with your own S3 path to the data source for Amazon ML. In the script, the text enclosed by angle brackets—< and >—should be replaced with your own path.
  4. Upload the json-serde-1.3.6-SNAPSHOT-jar-with-dependencies.jar file to your S3 path so that the ADD jar command in Apache Hive can refer to it.

For this solution, the banking.csv  should be imported into a DynamoDB table.

Export a DynamoDB table

To export the DynamoDB table to S3, open the Data Pipeline console and choose the Export DynamoDB table to S3 template. In this template, Data Pipeline creates an Amazon EMR cluster and performs an export in the EMRActivity activity. Set proper intervals for backups according to your business requirements.

One core node(m3.xlarge) provides the default capacity for the EMR cluster and should be suitable for the solution in this post. Leave the option to resize the cluster before running enabled in the TableBackupActivity activity to let Data Pipeline scale the cluster to match the table size. The process of converting to CSV format and renewing models happens in this EMR cluster.

For a more in-depth look at how to export data from DynamoDB, see Export Data from DynamoDB in the Data Pipeline documentation.

Add the script to an existing pipeline

After you export your DynamoDB table, you add an additional EMR step to EMRActivity by following these steps:

  1. Open the Data Pipeline console and choose the ID for the pipeline that you want to add the script to.
  2. For Actions, choose Edit.
  3. In the editing console, choose the Activities category and add an EMR step using the custom script downloaded in the previous section, as shown below.

Paste the following command into the new step after the data ­­upload step:

s3://#{myDDBRegion}.elasticmapreduce/libs/script-runner/script-runner.jar,s3://<your bucket name>/automation_script.sh,#{output.directoryPath},#{myDDBRegion}

The element #{output.directoryPath} references the S3 path where the data pipeline exports DynamoDB data as JSON. The path should be passed to the script as an argument.

The bash script has two goals, converting data formats and renewing the Amazon SageMaker model. Subsequent sections discuss the contents of the automation script.

Automation script: Convert JSON data to CSV with Hive

We use Apache Hive to transform the data into a new format. The Hive QL script to create an external table and transform the data is included in the custom script that you added to the Data Pipeline definition.

When you run the Hive scripts, do so with the -e option. Also, define the Hive table with the 'org.openx.data.jsonserde.JsonSerDe' row format to parse and read JSON format. The SQL creates a Hive EXTERNAL table, and it reads the DynamoDB backup data on the S3 path passed to it by Data Pipeline.

Note: You should create the table with the “EXTERNAL” keyword to avoid the backup data being accidentally deleted from S3 if you drop the table.

The full automation script for converting follows. Add your own bucket name and data source path in the highlighted areas.

#!/bin/bash
hive -e "
ADD jar s3://<your bucket name>/json-serde-1.3.6-SNAPSHOT-jar-with-dependencies.jar ; 
DROP TABLE IF EXISTS blog_backup_data ;
CREATE EXTERNAL TABLE blog_backup_data (
 customer_id map<string,string>,
 age map<string,string>, job map<string,string>, 
 marital map<string,string>,education map<string,string>, 
 default map<string,string>, housing map<string,string>,
 loan map<string,string>, contact map<string,string>, 
 month map<string,string>, day_of_week map<string,string>, 
 duration map<string,string>, campaign map<string,string>,
 pdays map<string,string>, previous map<string,string>, 
 poutcome map<string,string>, emp_var_rate map<string,string>, 
 cons_price_idx map<string,string>, cons_conf_idx map<string,string>,
 euribor3m map<string,string>, nr_employed map<string,string>, 
 y map<string,string> ) 
ROW FORMAT SERDE 'org.openx.data.jsonserde.JsonSerDe' 
LOCATION '$1/';

INSERT OVERWRITE DIRECTORY 's3://<your bucket name>/<datasource path>/' 
SELECT concat( customer_id['s'],',', 
 age['n'],',', job['s'],',', 
 marital['s'],',', education['s'],',', default['s'],',', 
 housing['s'],',', loan['s'],',', contact['s'],',', 
 month['s'],',', day_of_week['s'],',', duration['n'],',', 
 campaign['n'],',',pdays['n'],',',previous['n'],',', 
 poutcome['s'],',', emp_var_rate['n'],',', cons_price_idx['n'],',',
 cons_conf_idx['n'],',', euribor3m['n'],',', nr_employed['n'],',', y['n'] ) 
FROM blog_backup_data
WHERE customer_id['s'] > 0 ; 

After creating an external table, you need to read data. You then use the INSERT OVERWRITE DIRECTORY ~ SELECT command to write CSV data to the S3 path that you designated as the data source for Amazon SageMaker.

Depending on your requirements, you can eliminate or process the columns in the SELECT clause in this step to optimize data analysis. For example, you might remove some columns that have unpredictable correlations with the target value because keeping the wrong columns might expose your model to “overfitting” during the training. In this post, customer_id  columns is removed. Overfitting can make your prediction weak. More information about overfitting can be found in the topic Model Fit: Underfitting vs. Overfitting in the Amazon ML documentation.

Automation script: Renew the Amazon SageMaker model

After the CSV data is replaced and ready to use, create a new model artifact for Amazon SageMaker with the updated dataset on S3.  For renewing model artifact, you must create a new training job.  Training jobs can be run using the AWS SDK ( for example, Amazon SageMaker boto3 ) or the Amazon SageMaker Python SDK that can be installed with “pip install sagemaker” command as well as the AWS CLI for Amazon SageMaker described in this post.

In addition, consider how to smoothly renew your existing model without service impact, because your model is called by applications in real time. To do this, you need to create a new endpoint configuration first and update a current endpoint with the endpoint configuration that is just created.

#!/bin/bash
## Define variable 
REGION=$2
DTTIME=`date +%Y-%m-%d-%H-%M-%S`
ROLE="<your AmazonSageMaker-ExecutionRole>" 


# Select containers image based on region.  
case "$REGION" in
"us-west-2" )
    IMAGE="174872318107.dkr.ecr.us-west-2.amazonaws.com/linear-learner:latest"
    ;;
"us-east-1" )
    IMAGE="382416733822.dkr.ecr.us-east-1.amazonaws.com/linear-learner:latest" 
    ;;
"us-east-2" )
    IMAGE="404615174143.dkr.ecr.us-east-2.amazonaws.com/linear-learner:latest" 
    ;;
"eu-west-1" )
    IMAGE="438346466558.dkr.ecr.eu-west-1.amazonaws.com/linear-learner:latest" 
    ;;
 *)
    echo "Invalid Region Name"
    exit 1 ;  
esac

# Start training job and creating model artifact 
TRAINING_JOB_NAME=TRAIN-${DTTIME} 
S3OUTPUT="s3://<your bucket name>/model/" 
INSTANCETYPE="ml.m4.xlarge"
INSTANCECOUNT=1
VOLUMESIZE=5 
aws sagemaker create-training-job --training-job-name ${TRAINING_JOB_NAME} --region ${REGION}  --algorithm-specification TrainingImage=${IMAGE},TrainingInputMode=File --role-arn ${ROLE}  --input-data-config '[{ "ChannelName": "train", "DataSource": { "S3DataSource": { "S3DataType": "S3Prefix", "S3Uri": "s3://<your bucket name>/<datasource path>/", "S3DataDistributionType": "FullyReplicated" } }, "ContentType": "text/csv", "CompressionType": "None" , "RecordWrapperType": "None"  }]'  --output-data-config S3OutputPath=${S3OUTPUT} --resource-config  InstanceType=${INSTANCETYPE},InstanceCount=${INSTANCECOUNT},VolumeSizeInGB=${VOLUMESIZE} --stopping-condition MaxRuntimeInSeconds=120 --hyper-parameters feature_dim=20,predictor_type=binary_classifier  

# Wait until job completed 
aws sagemaker wait training-job-completed-or-stopped --training-job-name ${TRAINING_JOB_NAME}  --region ${REGION}

# Get newly created model artifact and create model
MODELARTIFACT=`aws sagemaker describe-training-job --training-job-name ${TRAINING_JOB_NAME} --region ${REGION}  --query 'ModelArtifacts.S3ModelArtifacts' --output text `
MODELNAME=MODEL-${DTTIME}
aws sagemaker create-model --region ${REGION} --model-name ${MODELNAME}  --primary-container Image=${IMAGE},ModelDataUrl=${MODELARTIFACT}  --execution-role-arn ${ROLE}

# create a new endpoint configuration 
CONFIGNAME=CONFIG-${DTTIME}
aws sagemaker  create-endpoint-config --region ${REGION} --endpoint-config-name ${CONFIGNAME}  --production-variants  VariantName=Users,ModelName=${MODELNAME},InitialInstanceCount=1,InstanceType=ml.m4.xlarge

# create or update the endpoint
STATUS=`aws sagemaker describe-endpoint --endpoint-name  ServiceEndpoint --query 'EndpointStatus' --output text --region ${REGION} `
if [[ $STATUS -ne "InService" ]] ;
then
    aws sagemaker  create-endpoint --endpoint-name  ServiceEndpoint  --endpoint-config-name ${CONFIGNAME} --region ${REGION}    
else
    aws sagemaker  update-endpoint --endpoint-name  ServiceEndpoint  --endpoint-config-name ${CONFIGNAME} --region ${REGION}
fi

Grant permission

Before you execute the script, you must grant proper permission to Data Pipeline. Data Pipeline uses the DataPipelineDefaultResourceRole role by default. I added the following policy to DataPipelineDefaultResourceRole to allow Data Pipeline to create, delete, and update the Amazon SageMaker model and data source in the script.

{
 "Version": "2012-10-17",
 "Statement": [
 {
 "Effect": "Allow",
 "Action": [
 "sagemaker:CreateTrainingJob",
 "sagemaker:DescribeTrainingJob",
 "sagemaker:CreateModel",
 "sagemaker:CreateEndpointConfig",
 "sagemaker:DescribeEndpoint",
 "sagemaker:CreateEndpoint",
 "sagemaker:UpdateEndpoint",
 "iam:PassRole"
 ],
 "Resource": "*"
 }
 ]
}

Use real-time prediction

After you deploy a model into production using Amazon SageMaker hosting services, your client applications use this API to get inferences from the model hosted at the specified endpoint. This approach is useful for interactive web, mobile, or desktop applications.

Following, I provide a simple Python code example that queries against Amazon SageMaker endpoint URL with its name (“ServiceEndpoint”) and then uses them for real-time prediction.

=== Python sample for real-time prediction ===

#!/usr/bin/env python
import boto3
import json 

client = boto3.client('sagemaker-runtime', region_name ='<your region>' )
new_customer_info = '34,10,2,4,1,2,1,1,6,3,190,1,3,4,3,-1.7,94.055,-39.8,0.715,4991.6'
response = client.invoke_endpoint(
    EndpointName='ServiceEndpoint',
    Body=new_customer_info, 
    ContentType='text/csv'
)
result = json.loads(response['Body'].read().decode())
print(result)
--- output(response) ---
{u'predictions': [{u'score': 0.7528127431869507, u'predicted_label': 1.0}]}

Solution summary

The solution takes the following steps:

  1. Data Pipeline exports DynamoDB table data into S3. The original JSON data should be kept to recover the table in the rare event that this is needed. Data Pipeline then converts JSON to CSV so that Amazon SageMaker can read the data.Note: You should select only meaningful attributes when you convert CSV. For example, if you judge that the “campaign” attribute is not correlated, you can eliminate this attribute from the CSV.
  2. Train the Amazon SageMaker model with the new data source.
  3. When a new customer comes to your site, you can judge how likely it is for this customer to subscribe to your new product based on “predictedScores” provided by Amazon SageMaker.
  4. If the new user subscribes your new product, your application must update the attribute “y” to the value 1 (for yes). This updated data is provided for the next model renewal as a new data source. It serves to improve the accuracy of your prediction. With each new entry, your application can become smarter and deliver better predictions.

Running ad hoc queries using Amazon Athena

Amazon Athena is a serverless query service that makes it easy to analyze large amounts of data stored in Amazon S3 using standard SQL. Athena is useful for examining data and collecting statistics or informative summaries about data. You can also use the powerful analytic functions of Presto, as described in the topic Aggregate Functions of Presto in the Presto documentation.

With the Data Pipeline scheduled activity, recent CSV data is always located in S3 so that you can run ad hoc queries against the data using Amazon Athena. I show this with example SQL statements following. For an in-depth description of this process, see the post Interactive SQL Queries for Data in Amazon S3 on the AWS News Blog. 

Creating an Amazon Athena table and running it

Simply, you can create an EXTERNAL table for the CSV data on S3 in Amazon Athena Management Console.

=== Table Creation ===
CREATE EXTERNAL TABLE datasource (
 age int, 
 job string, 
 marital string , 
 education string, 
 default string, 
 housing string, 
 loan string, 
 contact string, 
 month string, 
 day_of_week string, 
 duration int, 
 campaign int, 
 pdays int , 
 previous int , 
 poutcome string, 
 emp_var_rate double, 
 cons_price_idx double,
 cons_conf_idx double, 
 euribor3m double, 
 nr_employed double, 
 y int 
)
ROW FORMAT DELIMITED 
FIELDS TERMINATED BY ',' ESCAPED BY '\\' LINES TERMINATED BY '\n' 
LOCATION 's3://<your bucket name>/<datasource path>/';

The following query calculates the correlation coefficient between the target attribute and other attributes using Amazon Athena.

=== Sample Query ===

SELECT corr(age,y) AS correlation_age_and_target, 
 corr(duration,y) AS correlation_duration_and_target, 
 corr(campaign,y) AS correlation_campaign_and_target,
 corr(contact,y) AS correlation_contact_and_target
FROM ( SELECT age , duration , campaign , y , 
 CASE WHEN contact = 'telephone' THEN 1 ELSE 0 END AS contact 
 FROM datasource 
 ) datasource ;

Conclusion

In this post, I introduce an example of how to analyze data in DynamoDB by using table data in Amazon S3 to optimize DynamoDB table read capacity. You can then use the analyzed data as a new data source to train an Amazon SageMaker model for accurate real-time prediction. In addition, you can run ad hoc queries against the data on S3 using Amazon Athena. I also present how to automate these procedures by using Data Pipeline.

You can adapt this example to your specific use case at hand, and hopefully this post helps you accelerate your development. You can find more examples and use cases for Amazon SageMaker in the video AWS 2017: Introducing Amazon SageMaker on the AWS website.

 


Additional Reading

If you found this post useful, be sure to check out Serving Real-Time Machine Learning Predictions on Amazon EMR and Analyzing Data in S3 using Amazon Athena.

 


About the Author

Yong Seong Lee is a Cloud Support Engineer for AWS Big Data Services. He is interested in every technology related to data/databases and helping customers who have difficulties in using AWS services. His motto is “Enjoy life, be curious and have maximum experience.”

 

 

CI/CD with Data: Enabling Data Portability in a Software Delivery Pipeline with AWS Developer Tools, Kubernetes, and Portworx

Post Syndicated from Kausalya Rani Krishna Samy original https://aws.amazon.com/blogs/devops/cicd-with-data-enabling-data-portability-in-a-software-delivery-pipeline-with-aws-developer-tools-kubernetes-and-portworx/

This post is written by Eric Han – Vice President of Product Management Portworx and Asif Khan – Solutions Architect

Data is the soul of an application. As containers make it easier to package and deploy applications faster, testing plays an even more important role in the reliable delivery of software. Given that all applications have data, development teams want a way to reliably control, move, and test using real application data or, at times, obfuscated data.

For many teams, moving application data through a CI/CD pipeline, while honoring compliance and maintaining separation of concerns, has been a manual task that doesn’t scale. At best, it is limited to a few applications, and is not portable across environments. The goal should be to make running and testing stateful containers (think databases and message buses where operations are tracked) as easy as with stateless (such as with web front ends where they are often not).

Why is state important in testing scenarios? One reason is that many bugs manifest only when code is tested against real data. For example, we might simply want to test a database schema upgrade but a small synthetic dataset does not exercise the critical, finer corner cases in complex business logic. If we want true end-to-end testing, we need to be able to easily manage our data or state.

In this blog post, we define a CI/CD pipeline reference architecture that can automate data movement between applications. We also provide the steps to follow to configure the CI/CD pipeline.

 

Stateful Pipelines: Need for Portable Volumes

As part of continuous integration, testing, and deployment, a team may need to reproduce a bug found in production against a staging setup. Here, the hosting environment is comprised of a cluster with Kubernetes as the scheduler and Portworx for persistent volumes. The testing workflow is then automated by AWS CodeCommit, AWS CodePipeline, and AWS CodeBuild.

Portworx offers Kubernetes storage that can be used to make persistent volumes portable between AWS environments and pipelines. The addition of Portworx to the AWS Developer Tools continuous deployment for Kubernetes reference architecture adds persistent storage and storage orchestration to a Kubernetes cluster. The example uses MongoDB as the demonstration of a stateful application. In practice, the workflow applies to any containerized application such as Cassandra, MySQL, Kafka, and Elasticsearch.

Using the reference architecture, a developer calls CodePipeline to trigger a snapshot of the running production MongoDB database. Portworx then creates a block-based, writable snapshot of the MongoDB volume. Meanwhile, the production MongoDB database continues serving end users and is uninterrupted.

Without the Portworx integrations, a manual process would require an application-level backup of the database instance that is outside of the CI/CD process. For larger databases, this could take hours and impact production. The use of block-based snapshots follows best practices for resilient and non-disruptive backups.

As part of the workflow, CodePipeline deploys a new MongoDB instance for staging onto the Kubernetes cluster and mounts the second Portworx volume that has the data from production. CodePipeline triggers the snapshot of a Portworx volume through an AWS Lambda function, as shown here

 

 

 

AWS Developer Tools with Kubernetes: Integrated Workflow with Portworx

In the following workflow, a developer is testing changes to a containerized application that calls on MongoDB. The tests are performed against a staging instance of MongoDB. The same workflow applies if changes were on the server side. The original production deployment is scheduled as a Kubernetes deployment object and uses Portworx as the storage for the persistent volume.

The continuous deployment pipeline runs as follows:

  • Developers integrate bug fix changes into a main development branch that gets merged into a CodeCommit master branch.
  • Amazon CloudWatch triggers the pipeline when code is merged into a master branch of an AWS CodeCommit repository.
  • AWS CodePipeline sends the new revision to AWS CodeBuild, which builds a Docker container image with the build ID.
  • AWS CodeBuild pushes the new Docker container image tagged with the build ID to an Amazon ECR registry.
  • Kubernetes downloads the new container (for the database client) from Amazon ECR and deploys the application (as a pod) and staging MongoDB instance (as a deployment object).
  • AWS CodePipeline, through a Lambda function, calls Portworx to snapshot the production MongoDB and deploy a staging instance of MongoDB• Portworx provides a snapshot of the production instance as the persistent storage of the staging MongoDB
    • The MongoDB instance mounts the snapshot.

At this point, the staging setup mimics a production environment. Teams can run integration and full end-to-end tests, using partner tooling, without impacting production workloads. The full pipeline is shown here.

 

Summary

This reference architecture showcases how development teams can easily move data between production and staging for the purposes of testing. Instead of taking application-specific manual steps, all operations in this CodePipeline architecture are automated and tracked as part of the CI/CD process.

This integrated experience is part of making stateful containers as easy as stateless. With AWS CodePipeline for CI/CD process, developers can easily deploy stateful containers onto a Kubernetes cluster with Portworx storage and automate data movement within their process.

The reference architecture and code are available on GitHub:

● Reference architecture: https://github.com/portworx/aws-kube-codesuite
● Lambda function source code for Portworx additions: https://github.com/portworx/aws-kube-codesuite/blob/master/src/kube-lambda.py

For more information about persistent storage for containers, visit the Portworx website. For more information about Code Pipeline, see the AWS CodePipeline User Guide.

[$] PostgreSQL visits LSFMM

Post Syndicated from jake original https://lwn.net/Articles/752952/rss

The recent fsync() woes
experienced by
PostgreSQL led to a session on the first
day (April 23) of the 2108 Linux
Storage, Filesystem, and Memory-Management Summit (LSFMM). Those problems
also led
to a second-day session with PostgreSQL developer Andres Freund who gave an
overview of how PostgreSQL does I/O and where that ran aground on some
assumptions that had been made. The session led to a fair amount of
discussion with the filesystem-track developers; real solutions seem to be
in the offing.

Security updates for Tuesday

Post Syndicated from ris original https://lwn.net/Articles/753257/rss

Security updates have been issued by Fedora (cups-filters, ghostscript, glusterfs, PackageKit, qpdf, and xen), Mageia (anki, libofx, ming, sox, webkit2, and xdg-user-dirs), Oracle (corosync, java-1.7.0-openjdk, and pcs), Red Hat (java-1.7.0-openjdk), Scientific Linux (corosync, firefox, gcc, glibc, golang, java-1.7.0-openjdk, java-1.8.0-openjdk, kernel, krb5, librelp, libvncserver, libvorbis, ntp, openssh, openssl, PackageKit, patch, pcs, policycoreutils, qemu-kvm, and xdg-user-dirs), Slackware (libwmf and mozilla), and Ubuntu (apache2, ghostscript, mysql-5.7, wavpack, and webkit2gtk).

Security updates for Monday

Post Syndicated from ris original https://lwn.net/Articles/753137/rss

Security updates have been issued by Arch Linux (drupal), Debian (chromium-browser, gunicorn, libvorbis, openjdk-8, roundcube, sdl-image1.2, slurm-llnl, and tor), Fedora (boost, cups-filters, ghostscript, gsoap, memcached, mod_http2, and qpdf), openSUSE (Chromium and mysql-community-server), and Red Hat (glusterfs, OpenShift Container Platform 3.1, OpenShift Container Platform 3.2, OpenShift Container Platform 3.3, OpenShift Container Platform 3.4, OpenShift Container Platform 3.5, OpenShift Container Platform 3.6, OpenShift Container Platform 3.7, OpenShift Container Platform 3.8, OpenShift Container Platform 3.9, and openvswitch).

10 visualizations to try in Amazon QuickSight with sample data

Post Syndicated from Karthik Kumar Odapally original https://aws.amazon.com/blogs/big-data/10-visualizations-to-try-in-amazon-quicksight-with-sample-data/

If you’re not already familiar with building visualizations for quick access to business insights using Amazon QuickSight, consider this your introduction. In this post, we’ll walk through some common scenarios with sample datasets to provide an overview of how you can connect yuor data, perform advanced analysis and access the results from any web browser or mobile device.

The following visualizations are built from the public datasets available in the links below. Before we jump into that, let’s take a look at the supported data sources, file formats and a typical QuickSight workflow to build any visualization.

Which data sources does Amazon QuickSight support?

At the time of publication, you can use the following data methods:

  • Connect to AWS data sources, including:
    • Amazon RDS
    • Amazon Aurora
    • Amazon Redshift
    • Amazon Athena
    • Amazon S3
  • Upload Excel spreadsheets or flat files (CSV, TSV, CLF, and ELF)
  • Connect to on-premises databases like Teradata, SQL Server, MySQL, and PostgreSQL
  • Import data from SaaS applications like Salesforce and Snowflake
  • Use big data processing engines like Spark and Presto

This list is constantly growing. For more information, see Supported Data Sources.

Answers in instants

SPICE is the Amazon QuickSight super-fast, parallel, in-memory calculation engine, designed specifically for ad hoc data visualization. SPICE stores your data in a system architected for high availability, where it is saved until you choose to delete it. Improve the performance of database datasets by importing the data into SPICE instead of using a direct database query. To calculate how much SPICE capacity your dataset needs, see Managing SPICE Capacity.

Typical Amazon QuickSight workflow

When you create an analysis, the typical workflow is as follows:

  1. Connect to a data source, and then create a new dataset or choose an existing dataset.
  2. (Optional) If you created a new dataset, prepare the data (for example, by changing field names or data types).
  3. Create a new analysis.
  4. Add a visual to the analysis by choosing the fields to visualize. Choose a specific visual type, or use AutoGraph and let Amazon QuickSight choose the most appropriate visual type, based on the number and data types of the fields that you select.
  5. (Optional) Modify the visual to meet your requirements (for example, by adding a filter or changing the visual type).
  6. (Optional) Add more visuals to the analysis.
  7. (Optional) Add scenes to the default story to provide a narrative about some aspect of the analysis data.
  8. (Optional) Publish the analysis as a dashboard to share insights with other users.

The following graphic illustrates a typical Amazon QuickSight workflow.

Visualizations created in Amazon QuickSight with sample datasets

Visualizations for a data analyst

Source:  https://data.worldbank.org/

Download and Resources:  https://datacatalog.worldbank.org/dataset/world-development-indicators

Data catalog:  The World Bank invests into multiple development projects at the national, regional, and global levels. It’s a great source of information for data analysts.

The following graph shows the percentage of the population that has access to electricity (rural and urban) during 2000 in Asia, Africa, the Middle East, and Latin America.

The following graph shows the share of healthcare costs that are paid out-of-pocket (private vs. public). Also, you can maneuver over the graph to get detailed statistics at a glance.

Visualizations for a trading analyst

Source:  Deutsche Börse Public Dataset (DBG PDS)

Download and resources:  https://aws.amazon.com/public-datasets/deutsche-boerse-pds/

Data catalog:  The DBG PDS project makes real-time data derived from Deutsche Börse’s trading market systems available to the public for free. This is the first time that such detailed financial market data has been shared freely and continually from the source provider.

The following graph shows the market trend of max trade volume for different EU banks. It builds on the data available on XETRA engines, which is made up of a variety of equities, funds, and derivative securities. This graph can be scrolled to visualize trade for a period of an hour or more.

The following graph shows the common stock beating the rest of the maximum trade volume over a period of time, grouped by security type.

Visualizations for a data scientist

Source:  https://catalog.data.gov/

Download and resources:  https://catalog.data.gov/dataset/road-weather-information-stations-788f8

Data catalog:  Data derived from different sensor stations placed on the city bridges and surface streets are a core information source. The road weather information station has a temperature sensor that measures the temperature of the street surface. It also has a sensor that measures the ambient air temperature at the station each second.

The following graph shows the present max air temperature in Seattle from different RWI station sensors.

The following graph shows the minimum temperature of the road surface at different times, which helps predicts road conditions at a particular time of the year.

Visualizations for a data engineer

Source:  https://www.kaggle.com/

Download and resources:  https://www.kaggle.com/datasnaek/youtube-new/data

Data catalog:  Kaggle has come up with a platform where people can donate open datasets. Data engineers and other community members can have open access to these datasets and can contribute to the open data movement. They have more than 350 datasets in total, with more than 200 as featured datasets. It has a few interesting datasets on the platform that are not present at other places, and it’s a platform to connect with other data enthusiasts.

The following graph shows the trending YouTube videos and presents the max likes for the top 20 channels. This is one of the most popular datasets for data engineers.

The following graph shows the YouTube daily statistics for the max views of video titles published during a specific time period.

Visualizations for a business user

Source:  New York Taxi Data

Download and resources:  https://data.cityofnewyork.us/Transportation/2016-Green-Taxi-Trip-Data/hvrh-b6nb

Data catalog: NYC Open data hosts some very popular open data sets for all New Yorkers. This platform allows you to get involved in dive deep into the data set to pull some useful visualizations. 2016 Green taxi trip dataset includes trip records from all trips completed in green taxis in NYC in 2016. Records include fields capturing pick-up and drop-off dates/times, pick-up and drop-off locations, trip distances, itemized fares, rate types, payment types, and driver-reported passenger counts.

The following graph presents maximum fare amount grouped by the passenger count during a period of time during a day. This can be further expanded to follow through different day of the month based on the business need.

The following graph shows the NewYork taxi data from January 2016, showing the dip in the number of taxis ridden on January 23, 2016 across all types of taxis.

A quick search for that date and location shows you the following news report:

Summary

Using Amazon QuickSight, you can see patterns across a time-series data by building visualizations, performing ad hoc analysis, and quickly generating insights. We hope you’ll give it a try today!

 


Additional Reading

If you found this post useful, be sure to check out Amazon QuickSight Adds Support for Combo Charts and Row-Level Security and Visualize AWS Cloudtrail Logs Using AWS Glue and Amazon QuickSight.


Karthik Odapally is a Sr. Solutions Architect in AWS. His passion is to build cost effective and highly scalable solutions on the cloud. In his spare time, he bakes cookies and cupcakes for family and friends here in the PNW. He loves vintage racing cars.

 

 

 

Pranabesh Mandal is a Solutions Architect in AWS. He has over a decade of IT experience. He is passionate about cloud technology and focuses on Analytics. In his spare time, he likes to hike and explore the beautiful nature and wild life of most divine national parks around the United States alongside his wife.

 

 

 

 

timeShift(GrafanaBuzz, 1w) Issue 42

Post Syndicated from Blogs on Grafana Labs Blog original https://grafana.com/blog/2018/04/27/timeshiftgrafanabuzz-1w-issue-42/

Welcome to TimeShift Grafana v5.1 Stable is available! Two of the biggest new features include a native data source for MSSQL Server and heatmap support for Prometheus. Download the latest release and checkout other new features and fixes below.
Heading to KubeCon + CloudNativeCon Europe 2018 in Copenhagen, Denmark, May 2-4? Come by our booth and say hi! Also don’t miss Tom Wilkie’s talk on Prometheus Monitoring Mixins: Using Jsonnet to Package Together Dashboards, Alerts and Exporters, and Goutham Veeramanchaneni’s talks: TSDB: The Engine behind Prometheus and TSDB: The Past, Present and the Future Latest Release We received a lot of great suggestions, bug reports and pull requests from our amazing community – Thank you all!